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Description : (at4g18750 : 495.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 144.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 990.0) & (original description: no original description)
Gene families : OG_42_0022178 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00046616-RA | |
| Cluster | HCCA clusters: Cluster_378 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001871 | pattern binding | IEP | Predicted GO |
| BP | GO:0009719 | response to endogenous stimulus | IEP | Predicted GO |
| BP | GO:0009725 | response to hormone | IEP | Predicted GO |
| BP | GO:0010033 | response to organic substance | IEP | Predicted GO |
| MF | GO:0030246 | carbohydrate binding | IEP | Predicted GO |
| MF | GO:0030247 | polysaccharide binding | IEP | Predicted GO |
| BP | GO:0042221 | response to chemical | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 420 | 445 |
| IPR002885 | Pentatricopeptide_repeat | 286 | 315 |
| IPR002885 | Pentatricopeptide_repeat | 621 | 645 |
| IPR002885 | Pentatricopeptide_repeat | 253 | 285 |
| IPR002885 | Pentatricopeptide_repeat | 346 | 392 |
| IPR002885 | Pentatricopeptide_repeat | 446 | 493 |
| IPR002885 | Pentatricopeptide_repeat | 151 | 200 |
| IPR002885 | Pentatricopeptide_repeat | 547 | 593 |
| No external refs found! |