1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00046676-RA

PSME_00046676-RA


Description : (at1g48090 : 146.0) calcium-dependent lipid-binding family protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Protein of unknown function DUF946 (InterPro:IPR009291), Vacuolar protein sorting-associated protein (InterPro:IPR009543), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein (TAIR:AT4G17140.2); Has 2732 Blast hits to 1481 proteins in 212 species: Archae - 2; Bacteria - 15; Metazoa - 1181; Fungi - 466; Plants - 461; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)


Gene families : OG_42_0000864 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000864_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00046676-RA

Target Alias Description ECC score Gene Family Method Actions
Cre17.g730650 No alias Function unknown 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR022087 DA1-like 19 47
No external refs found!