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  5. PSME_00047040-RA

PSME_00047040-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0003769 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047040-RA
Cluster HCCA clusters: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
PSME_00000018-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00002810-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00017688-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00019123-RA No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00030967-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00037254-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00050879-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003656 Znf_BED 14 51
No external refs found!