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  5. PSME_00047078-RA

PSME_00047078-RA


Description : (at1g54490 : 144.0) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.; exoribonuclease 4 (XRN4); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: 5'-3' exoribonuclease 3 (TAIR:AT1G75660.1); Has 1935 Blast hits to 1539 proteins in 314 species: Archae - 0; Bacteria - 132; Metazoa - 355; Fungi - 561; Plants - 185; Viruses - 14; Other Eukaryotes - 688 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)


Gene families : OG_42_0000619 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000619_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047078-RA

Target Alias Description ECC score Gene Family Method Actions
Cre08.g373916 No alias exoribonuclease 2 0.01 Orthogroups_2024-Update
Glyma.11G180000 No alias 5\'-3\' exoribonuclease 3 0.02 Orthogroups_2024-Update
Potri.002G024100 No alias 5\'-3\' exoribonuclease 3 0.01 Orthogroups_2024-Update
Potri.005G237500 No alias 5\'-3\' exoribonuclease 3 0.02 Orthogroups_2024-Update
evm.model.contig_527.3 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!