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  5. PSME_00047140-RA

PSME_00047140-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000435 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047140-RA
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
A4A49_18487 No alias transcription factor bhlh120 0.03 Orthogroups_2024-Update
Glyma.17G090500 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
PSME_00004971-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00012478-RA No alias (at4g25410 : 87.4) basic helix-loop-helix (bHLH)... 0.05 Orthogroups_2024-Update
PSME_00012481-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00012621-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00017592-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00019232-RA No alias (at5g51790 : 82.4) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
PSME_00019999-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00027146-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00029422-RA No alias (at4g25410 : 89.0) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
PSME_00029446-RA No alias (at1g12540 : 86.7) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
PSME_00052913-RA No alias (at4g25400 : 80.9) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!