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  5. PSME_00047156-RA

PSME_00047156-RA


Description : (at5g61990 : 541.0) Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q76c99|rf1_orysa : 373.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1082.0) & (original description: no original description)


Gene families : OG_42_0007676 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007676_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047156-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Bradi1g51377 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.001G020501 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sopen03g037190 No alias PPR repeat family 0.02 Orthogroups_2024-Update
evm.model.tig00001623.10 No alias (at5g04810 : 174.0) pentatricopeptide (PPR)... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 941 973
IPR002885 Pentatricopeptide_repeat 242 273
IPR002885 Pentatricopeptide_repeat 730 762
IPR002885 Pentatricopeptide_repeat 556 587
IPR002885 Pentatricopeptide_repeat 279 328
IPR002885 Pentatricopeptide_repeat 979 1026
IPR002885 Pentatricopeptide_repeat 664 713
IPR002885 Pentatricopeptide_repeat 594 643
IPR002885 Pentatricopeptide_repeat 839 885
IPR002885 Pentatricopeptide_repeat 489 538
IPR002885 Pentatricopeptide_repeat 350 398
IPR002885 Pentatricopeptide_repeat 769 818
IPR002885 Pentatricopeptide_repeat 419 468
IPR002885 Pentatricopeptide_repeat 178 206
IPR002885 Pentatricopeptide_repeat 213 241
No external refs found!