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  5. PSME_00047162-RA

PSME_00047162-RA


Description : (at4g03210 : 301.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q41542|xth_wheat : 271.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) - Triticum aestivum (Wheat) & (reliability: 602.0) & (original description: no original description)


Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047162-RA
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
A4A49_22229 No alias putative xyloglucan endotransglucosylasehydrolase protein 32 0.02 Orthogroups_2024-Update
A4A49_30032 No alias putative xyloglucan endotransglucosylasehydrolase protein 16 0.04 Orthogroups_2024-Update
A4A49_36014 No alias putative xyloglucan endotransglucosylasehydrolase protein 16 0.04 Orthogroups_2024-Update
At4g30290 No alias Xyloglucan endotransglucosylase/hydrolase... 0.02 Orthogroups_2024-Update
At4g37800 No alias Probable xyloglucan endotransglucosylase/hydrolase... 0.02 Orthogroups_2024-Update
Bradi1g27867 No alias xyloglucan endotransglucosylase/hydrolase 32 0.03 Orthogroups_2024-Update
Bradi1g33810 No alias Xyloglucan endotransglucosylase/hydrolase family protein 0.04 Orthogroups_2024-Update
Bradi5g22907 No alias xyloglucan endotransglucosylase/hydrolase 9 0.02 Orthogroups_2024-Update
Brara.A01575.1 No alias EC_2.4 glycosyltransferase 0.02 Orthogroups_2024-Update
Brara.D02241.1 No alias xyloglucan endotransglucosylase/hydrolase *(XTH) &... 0.02 Orthogroups_2024-Update
GRMZM2G004699 No alias xyloglucan endotransglucosylase/hydrolase 5 0.02 Orthogroups_2024-Update
GRMZM2G392125 No alias xyloglucan endotransglucosylase/hydrolase 24 0.03 Orthogroups_2024-Update
Glyma.05G109600 No alias xyloglucan endotransglucosylase/hydrolase 6 0.03 Orthogroups_2024-Update
Glyma.11G044800 No alias xyloglucan endotransglucosylase/hydrolase 6 0.03 Orthogroups_2024-Update
Glyma.11G253900 No alias xyloglucan endotransglucosylase/hydrolase 16 0.03 Orthogroups_2024-Update
Glyma.12G080100 No alias xyloglucan endotransglucosylase/hydrolase 32 0.02 Orthogroups_2024-Update
Glyma.13G094900 No alias Xyloglucan endotransglucosylase/hydrolase family protein 0.02 Orthogroups_2024-Update
Glyma.13G095200 No alias xyloglucan endotransglycosylase 6 0.02 Orthogroups_2024-Update
Glyma.15G169100 No alias xyloglucan endotransglycosylase 6 0.02 Orthogroups_2024-Update
Glyma.17G157400 No alias xyloglucan endotransglucosylase/hydrolase 6 0.03 Orthogroups_2024-Update
Glyma.18G106500 No alias xyloglucan endotransglucosylase/hydrolase 15 0.05 Orthogroups_2024-Update
Glyma.U031113 No alias xyloglucan endotransglucosylase/hydrolase 9 0.02 Orthogroups_2024-Update
HORVU7Hr1G098280.1 No alias EC_2.4 glycosyltransferase 0.04 Orthogroups_2024-Update
LOC_Os03g01800 No alias glycosyl hydrolases family 16, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g48180 No alias glycosyl hydrolases family 16, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g29750 No alias glycosyl hydrolases family 16, putative, expressed 0.02 Orthogroups_2024-Update
MA_10430695g0010 No alias (p35694|bru1_soybn : 327.0) Brassinosteroid-regulated... 0.02 Orthogroups_2024-Update
MA_10434153g0020 No alias (q41638|xtha_phaan : 378.0) Xyloglucan... 0.03 Orthogroups_2024-Update
MA_11511g0010 No alias (at2g36870 : 354.0) xyloglucan... 0.03 Orthogroups_2024-Update
MA_20669g0010 No alias (at2g36870 : 290.0) xyloglucan... 0.04 Orthogroups_2024-Update
MA_476450g0010 No alias (at5g65730 : 440.0) xyloglucan... 0.04 Orthogroups_2024-Update
Mp4g01200.1 No alias Enzyme classification.EC_2 transferases.EC_2.4... 0.03 Orthogroups_2024-Update
PSME_00015769-RA No alias (p35694|bru1_soybn : 351.0) Brassinosteroid-regulated... 0.04 Orthogroups_2024-Update
PSME_00016554-RA No alias (at2g36870 : 288.0) xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00019699-RA No alias (q39857|xth_soybn : 456.0) Probable xyloglucan... 0.04 Orthogroups_2024-Update
PSME_00022622-RA No alias (q41638|xtha_phaan : 479.0) Xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00031691-RA No alias (p35694|bru1_soybn : 332.0) Brassinosteroid-regulated... 0.03 Orthogroups_2024-Update
PSME_00033686-RA No alias (at2g36870 : 309.0) xyloglucan... 0.02 Orthogroups_2024-Update
PSME_00040047-RA No alias (at2g36870 : 242.0) xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00040364-RA No alias (at4g03210 : 145.0) encodes a member of xyloglucan... 0.04 Orthogroups_2024-Update
PSME_00045889-RA No alias (p35694|bru1_soybn : 350.0) Brassinosteroid-regulated... 0.05 Orthogroups_2024-Update
PSME_00047577-RA No alias (at4g03210 : 346.0) encodes a member of xyloglucan... 0.04 Orthogroups_2024-Update
Potri.001G071000 No alias xyloglucan endotransglucosylase/hydrolase 5 0.02 Orthogroups_2024-Update
Potri.003G159700 No alias xyloglucan endotransglucosylase/hydrolase 5 0.04 Orthogroups_2024-Update
Potri.006G122900 No alias xyloglucan endotransglucosylase/hydrolase 32 0.04 Orthogroups_2024-Update
Potri.006G169900 No alias xyloglucan endotransglycosylase 6 0.02 Orthogroups_2024-Update
Potri.007G008500 No alias xyloglucan endotransglucosylase/hydrolase 6 0.03 Orthogroups_2024-Update
Potri.018G094800 No alias Xyloglucan endotransglucosylase/hydrolase family protein 0.02 Orthogroups_2024-Update
Pp1s309_28V6 No alias xyloglucan endotransglycosylase 0.02 Orthogroups_2024-Update
Seita.4G246400.1 No alias EC_2.4 glycosyltransferase 0.04 Orthogroups_2024-Update
Seita.7G227400.1 No alias EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Sobic.001G538000.1 No alias xyloglucan endotransglucosylase/hydrolase *(XTH) &... 0.03 Orthogroups_2024-Update
Sobic.010G246400.1 No alias EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Solyc01g099630 No alias xyloglucan endotransglucosylase-hydrolase 1 0.03 Orthogroups_2024-Update
Solyc03g093080 No alias Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc07g006860 No alias Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc07g055990 No alias Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1... 0.03 Orthogroups_2024-Update
Solyc12g098610 No alias Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen03g023900 No alias Glycosyl hydrolases family 16 0.02 Orthogroups_2024-Update
Sopen07g029350 No alias Glycosyl hydrolases family 16 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
CC GO:0005618 cell wall IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
BP GO:0006073 cellular glucan metabolic process IEA InterProScan predictions
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEA InterProScan predictions
CC GO:0048046 apoplast IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000757 GH16 17 192
IPR010713 XET_C 224 266
No external refs found!