PSME_00047378-RA

Description : (at4g25810 : 342.0) xyloglucan endotransglycosylase-related protein (XTR6); xyloglucan endotransglycosylase 6 (XTR6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2255 Blast hits to 2235 proteins in 316 species: Archae - 0; Bacteria - 302; Metazoa - 0; Fungi - 455; Plants - 1384; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). & (p35694|bru1_soybn : 342.0) Brassinosteroid-regulated protein BRU1 precursor - Glycine max (Soybean) & (reliability: 646.0) & (original description: no original description)

Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00047378-RA
Cluster	HCCA clusters: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
AC210669.3_FG001	No alias	Xyloglucan endotransglucosylase/hydrolase family protein	0.02	Orthogroups_2024-Update
At2g06850	No alias	Xyloglucan endotransglucosylase/hydrolase protein 4...	0.03	Orthogroups_2024-Update
At4g25810	No alias	Probable xyloglucan endotransglucosylase/hydrolase...	0.03	Orthogroups_2024-Update
At5g57550	No alias	Probable xyloglucan endotransglucosylase/hydrolase...	0.03	Orthogroups_2024-Update
MA_11511g0010	No alias	(at2g36870 : 354.0) xyloglucan...	0.05	Orthogroups_2024-Update
MA_328340g0010	No alias	(at4g03210 : 285.0) encodes a member of xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00016554-RA	No alias	(at2g36870 : 288.0) xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00022622-RA	No alias	(q41638\|xtha_phaan : 479.0) Xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00033177-RA	No alias	(at4g25810 : 347.0) xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00047371-RA	No alias	(p35694\|bru1_soybn : 289.0) Brassinosteroid-regulated...	0.05	Orthogroups_2024-Update
Potri.013G152400	No alias	xyloglucan endotransglucosylase/hydrolase 9	0.03	Orthogroups_2024-Update
Potri.018G095100	No alias	xyloglucan endotransglycosylase 6	0.04	Orthogroups_2024-Update
Pp1s11_339V6	No alias	xyloglucan endotransglucosylase hydrolase protein a	0.03	Orthogroups_2024-Update
Solyc03g093080	No alias	Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc07g006860	No alias	Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
Solyc07g055990	No alias	Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1...	0.04	Orthogroups_2024-Update
Sopen07g026530	No alias	Glycosyl hydrolases family 16	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
CC	GO:0048046	apoplast	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0004096	catalase activity	IEP	Predicted GO
BP	GO:0006555	methionine metabolic process	IEP	Predicted GO
MF	GO:0008430	selenium binding	IEP	Predicted GO
BP	GO:0009086	methionine biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000757	GH16	29	214
IPR010713	XET_C	231	275

External Links

No external refs found!

PSME_00047378-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation