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  5. PSME_00047383-RA

PSME_00047383-RA


Description : (at5g21960 : 119.0) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G19210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047383-RA
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Glyma.03G258200 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
MA_12171g0010 No alias (at5g21960 : 119.0) encodes a member of the DREB... 0.01 Orthogroups_2024-Update
MA_40338g0010 No alias (at1g21910 : 84.7) encodes a member of the DREB... 0.01 Orthogroups_2024-Update
PSME_00000850-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00032588-RA No alias (at4g17490 : 92.8) Encodes a member of the ERF (ethylene... 0.05 Orthogroups_2024-Update
PSME_00038114-RA No alias (q9lw48|erf5_nicsy : 94.4) Ethylene-responsive... 0.08 Orthogroups_2024-Update
PSME_00042946-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00046052-RA No alias (at1g19210 : 89.0) encodes a member of the DREB... 0.1 Orthogroups_2024-Update
PSME_00048384-RA No alias (at5g11190 : 113.0) encodes a member of the ERF... 0.01 Orthogroups_2024-Update
PSME_00053215-RA No alias (at4g17490 : 92.0) Encodes a member of the ERF (ethylene... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 24 72
No external refs found!