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  5. PSME_00047409-RA

PSME_00047409-RA


Description : (at3g17450 : 85.9) hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 171.8) & (original description: no original description)


Gene families : OG_42_0002139 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002139_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047409-RA

Target Alias Description ECC score Gene Family Method Actions
PSME_00011439-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00032769-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00034956-RA No alias (at3g17450 : 83.2) hAT dimerisation domain-containing... 0.04 Orthogroups_2024-Update
PSME_00048076-RA No alias (at3g17450 : 107.0) hAT dimerisation domain-containing... 0.04 Orthogroups_2024-Update
PSME_00050555-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR007021 DUF659 3 97
No external refs found!