PSME_00047577-RA

Description : (at4g03210 : 346.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39857|xth_soybn : 319.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (reliability: 692.0) & (original description: no original description)

Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00047577-RA
Cluster	HCCA clusters: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method
119243	No alias	xyloglucan endotransglucosylase/hydrolase 5	0.04	Orthogroups_2024-Update
A4A49_15625	No alias	xyloglucan endotransglucosylasehydrolase 1	0.04	Orthogroups_2024-Update
A4A49_17794	No alias	putative xyloglucan endotransglucosylasehydrolase protein 26	0.02	Orthogroups_2024-Update
A4A49_21656	No alias	xyloglucan endotransglucosylasehydrolase protein 24	0.03	Orthogroups_2024-Update
A4A49_26736	No alias	xyloglucan endotransglucosylasehydrolase protein 15	0.03	Orthogroups_2024-Update
A4A49_26737	No alias	xyloglucan endotransglucosylasehydrolase protein 15	0.02	Orthogroups_2024-Update
A4A49_30032	No alias	putative xyloglucan endotransglucosylasehydrolase protein 16	0.03	Orthogroups_2024-Update
A4A49_36014	No alias	putative xyloglucan endotransglucosylasehydrolase protein 16	0.03	Orthogroups_2024-Update
At2g06850	No alias	Xyloglucan endotransglucosylase/hydrolase protein 4...	0.02	Orthogroups_2024-Update
At3g25050	No alias	Xyloglucan endotransglucosylase/hydrolase protein 3...	0.03	Orthogroups_2024-Update
At4g14130	No alias	Xyloglucan endotransglucosylase/hydrolase protein 15...	0.03	Orthogroups_2024-Update
Bradi1g33810	No alias	Xyloglucan endotransglucosylase/hydrolase family protein	0.06	Orthogroups_2024-Update
Bradi5g20726	No alias	xyloglucan endotransglucosylase/hydrolase 13	0.04	Orthogroups_2024-Update
Brara.C01845.1	No alias	xyloglucan endotransglucosylase/hydrolase *(XTH) &...	0.02	Orthogroups_2024-Update
Brara.E00809.1	No alias	xyloglucan endotransglucosylase/hydrolase *(XTH) &...	0.02	Orthogroups_2024-Update
Brara.F01864.1	No alias	xyloglucan endotransglucosylase/hydrolase *(XTH) &...	0.03	Orthogroups_2024-Update
Glyma.05G109600	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.04	Orthogroups_2024-Update
Glyma.10G054200	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.03	Orthogroups_2024-Update
Glyma.12G080100	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.02	Orthogroups_2024-Update
Glyma.13G094900	No alias	Xyloglucan endotransglucosylase/hydrolase family protein	0.05	Orthogroups_2024-Update
Glyma.13G095200	No alias	xyloglucan endotransglycosylase 6	0.04	Orthogroups_2024-Update
HORVU2Hr1G101170.2	No alias	EC_2.4 glycosyltransferase	0.03	Orthogroups_2024-Update
LOC_Os03g01800	No alias	glycosyl hydrolases family 16, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g29750	No alias	glycosyl hydrolases family 16, putative, expressed	0.03	Orthogroups_2024-Update
MA_10430695g0010	No alias	(p35694\|bru1_soybn : 327.0) Brassinosteroid-regulated...	0.05	Orthogroups_2024-Update
MA_10430703g0010	No alias	(p35694\|bru1_soybn : 343.0) Brassinosteroid-regulated...	0.03	Orthogroups_2024-Update
MA_10432086g0020	No alias	(p35694\|bru1_soybn : 289.0) Brassinosteroid-regulated...	0.03	Orthogroups_2024-Update
MA_10433908g0010	No alias	(at4g03210 : 268.0) encodes a member of xyloglucan...	0.03	Orthogroups_2024-Update
MA_10434153g0010	No alias	(q41638\|xtha_phaan : 238.0) Xyloglucan...	0.03	Orthogroups_2024-Update
MA_10434153g0020	No alias	(q41638\|xtha_phaan : 378.0) Xyloglucan...	0.02	Orthogroups_2024-Update
MA_894023g0010	No alias	(at5g13870 : 233.0) EXGT-A4, endoxyloglucan...	0.04	Orthogroups_2024-Update
PSME_00011813-RA	No alias	(at5g57560 : 322.0) Encodes a cell wall-modifying...	0.03	Orthogroups_2024-Update
PSME_00017708-RA	No alias	(at4g03210 : 291.0) encodes a member of xyloglucan...	0.05	Orthogroups_2024-Update
PSME_00019699-RA	No alias	(q39857\|xth_soybn : 456.0) Probable xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00031691-RA	No alias	(p35694\|bru1_soybn : 332.0) Brassinosteroid-regulated...	0.05	Orthogroups_2024-Update
PSME_00033177-RA	No alias	(at4g25810 : 347.0) xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00045889-RA	No alias	(p35694\|bru1_soybn : 350.0) Brassinosteroid-regulated...	0.03	Orthogroups_2024-Update
PSME_00047162-RA	No alias	(at4g03210 : 301.0) encodes a member of xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00047371-RA	No alias	(p35694\|bru1_soybn : 289.0) Brassinosteroid-regulated...	0.04	Orthogroups_2024-Update
Potri.002G244200	No alias	xyloglucan endotransglucosylase/hydrolase 2	0.02	Orthogroups_2024-Update
Potri.007G008500	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.03	Orthogroups_2024-Update
Pp1s193_16V6	No alias	MAC12.33; xyloglucan endotransglycosylase (EXGT-A4)...	0.03	Orthogroups_2024-Update
Pp1s309_41V6	No alias	xyloglucan endotransglucosylase hydrolase protein a	0.02	Orthogroups_2024-Update
Seita.4G246200.1	No alias	EC_2.4 glycosyltransferase	0.02	Orthogroups_2024-Update
Seita.4G246400.1	No alias	EC_2.4 glycosyltransferase	0.04	Orthogroups_2024-Update
Seita.7G250500.1	No alias	EC_2.4 glycosyltransferase	0.03	Orthogroups_2024-Update
Seita.8G142000.1	No alias	EC_2.4 glycosyltransferase	0.07	Orthogroups_2024-Update
Sobic.005G140001.1	No alias	EC_2.4 glycosyltransferase	0.02	Orthogroups_2024-Update
Sobic.010G246400.1	No alias	EC_2.4 glycosyltransferase	0.02	Orthogroups_2024-Update
Sobic.010G246600.1	No alias	EC_2.4 glycosyltransferase	0.03	Orthogroups_2024-Update
Solyc03g093130	No alias	xyloglucan endotransglucosylase-hydrolase 3	0.02	Orthogroups_2024-Update
Solyc07g006860	No alias	Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
Solyc12g007250	No alias	Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
Sopen09g003140	No alias	Glycosyl hydrolases family 16	0.03	Orthogroups_2024-Update
Sopen11g026010	No alias	Glycosyl hydrolases family 16	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
CC	GO:0048046	apoplast	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0031225	anchored component of membrane	IEP	Predicted GO
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
CC	GO:0046658	anchored component of plasma membrane	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000757	GH16	31	205
IPR010713	XET_C	234	280

External Links

No external refs found!

PSME_00047577-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation