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  5. PSME_00047640-RA

PSME_00047640-RA


Description : (at3g03740 : 239.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description)


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047640-RA
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
438494 No alias BTB/POZ domain-containing protein 0.03 Orthogroups_2024-Update
Bradi1g10475 No alias BTB-POZ and MATH domain 2 0.03 Orthogroups_2024-Update
Bradi1g56500 No alias BTB-POZ and MATH domain 4 0.03 Orthogroups_2024-Update
Brara.C02029.1 No alias substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
PSME_00025448-RA No alias (at5g21010 : 195.0) BTB-POZ and MATH domain 5 (BPM5);... 0.05 Orthogroups_2024-Update
PSME_00050421-RA No alias (at3g03740 : 244.0) BTB-POZ and MATH domain 4 (BPM4);... 0.06 Orthogroups_2024-Update
Sobic.007G087200.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011705 BACK 213 252
IPR000210 BTB/POZ_dom 85 193
No external refs found!