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  5. PSME_00047957-RA

PSME_00047957-RA


Description : (at2g30420 : 87.4) In a tandem repeat with AT2G30424 and AT2G30432; ENHANCER OF TRY AND CPC 2 (ETC2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome patterning, regulation of transcription; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30424.1); Has 1991 Blast hits to 1991 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1974; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description)


Gene families : OG_42_0002018 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002018_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047957-RA
Cluster HCCA clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
Brara.B02543.1 No alias R3-MYB transcription factor 0.02 Orthogroups_2024-Update
Brara.I05606.1 No alias R3-MYB transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 29 67
No external refs found!