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PSME_00047959-RA


Description : (p41624|psbb_pinth : 521.0) Photosystem II P680 chlorophyll A apoprotein (CP-47 protein) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00680 : 484.0) encodes for CP47, subunit of the photosystem II reaction center.; photosystem II reaction center protein B (PSBB); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction, photosystem II assembly; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II, PsbB (InterPro:IPR017486); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein C (TAIR:ATCG00280.1). & (reliability: 968.0) & (original description: no original description)


Gene families : OG_42_0002336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047959-RA
Cluster HCCA clusters: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
137729 No alias photosystem II reaction center protein B 0.09 Orthogroups_2024-Update
Bradi1g05740 No alias photosystem II reaction center protein B 0.07 Orthogroups_2024-Update
Bradi5g09702 No alias photosystem II reaction center protein B 0.06 Orthogroups_2024-Update
Brara.E02421.1 No alias Unknown function 0.07 Orthogroups_2024-Update
LOC_Os10g21310 No alias photosystem II P680 chlorophyll A apoprotein, putative, expressed 0.04 Orthogroups_2024-Update
Potri.011G113900 No alias photosystem II reaction center protein B 0.02 Orthogroups_2024-Update
Pp1s27_263V6 No alias photosystem ii 47 kda protein 0.06 Orthogroups_2024-Update
Seita.J014000.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.003G169100.1 No alias component *(PsbB/CP47) of PS-II reaction center complex 0.07 Orthogroups_2024-Update
Sobic.003G172200.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc01g007500 No alias No description available 0.05 Orthogroups_2024-Update
Sopen01g008000 No alias Photosystem II protein 0.02 Orthogroups_2024-Update
Sopen05g017070 No alias Photosystem II protein 0.02 Orthogroups_2024-Update
evm.model.contig_2297.1 No alias (p09447|psbb_secce : 447.0) Photosystem II P680... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA InterProScan predictions
BP GO:0009767 photosynthetic electron transport chain IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016168 chlorophyll binding IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009060 aerobic respiration IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0031647 regulation of protein stability IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
MF GO:0042301 phosphate ion binding IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0045333 cellular respiration IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0050821 protein stabilization IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 7 35
IPR000932 PS_antenna-like 250 317
IPR000932 PS_antenna-like 36 251
No external refs found!