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Description : (at5g55840 : 367.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 325.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 734.0) & (original description: no original description)
Gene families : OG_42_0008145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008145_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00048033-RA | |
| Cluster | HCCA clusters: Cluster_118 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004645 | phosphorylase activity | IEP | Predicted GO |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0006855 | drug transmembrane transport | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008184 | glycogen phosphorylase activity | IEP | Predicted GO |
| MF | GO:0015238 | drug transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015297 | antiporter activity | IEP | Predicted GO |
| BP | GO:0015893 | drug transport | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| CC | GO:0019867 | outer membrane | IEP | Predicted GO |
| CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
| CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| MF | GO:2001070 | starch binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 685 | 732 |
| IPR002885 | Pentatricopeptide_repeat | 475 | 524 |
| IPR002885 | Pentatricopeptide_repeat | 580 | 629 |
| IPR002885 | Pentatricopeptide_repeat | 370 | 419 |
| IPR002885 | Pentatricopeptide_repeat | 265 | 314 |
| IPR002885 | Pentatricopeptide_repeat | 792 | 817 |
| IPR002885 | Pentatricopeptide_repeat | 654 | 683 |
| IPR002885 | Pentatricopeptide_repeat | 752 | 770 |
| IPR002885 | Pentatricopeptide_repeat | 437 | 468 |
| IPR002885 | Pentatricopeptide_repeat | 331 | 363 |
| IPR002885 | Pentatricopeptide_repeat | 542 | 573 |
| No external refs found! |