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  5. PSME_00048117-RA

PSME_00048117-RA


Description : "(at1g56170 : 152.0) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues; ""nuclear factor Y, subunit C2"" (NF-YC2); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1485 Blast hits to 1485 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 338; Plants - 429; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)"


Gene families : OG_42_0000527 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00048117-RA
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
At5g50480 No alias NF-YC6 [Source:UniProtKB/TrEMBL;Acc:A0A178UER5] 0.03 Orthogroups_2024-Update
Cre12.g556400 No alias nuclear factor Y, subunit C4 0.01 Orthogroups_2024-Update
GRMZM2G124421 No alias nuclear factor Y, subunit C2 0.02 Orthogroups_2024-Update
MA_10163039g0010 No alias "(at5g63470 : 161.0) ""nuclear factor Y, subunit C4""... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 7 70
No external refs found!