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  5. PSME_00048166-RA

PSME_00048166-RA


Description : (at2g16910 : 116.0) Encodes a basic helix-loop helix transcription factor involved in tapetal cell development. Loss of function mutations are male sterile. AMS binds to a region termed the E box of target gene promoters.; ABORTED MICROSPORES (AMS); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: tapetal layer development, regulation of transcription, pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, sepal, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description)


Gene families : OG_42_0000609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000609_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00048166-RA
Cluster HCCA clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
A4A49_08252 No alias transcription factor bhlh35 0.03 Orthogroups_2024-Update
A4A49_21428 No alias transcription factor fer-like iron deficiency-induced... 0.03 Orthogroups_2024-Update
Brara.D01683.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.02 Orthogroups_2024-Update
Brara.G01353.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.03 Orthogroups_2024-Update
Glyma.12G081200 No alias FER-like regulator of iron uptake 0.04 Orthogroups_2024-Update
LOC_Os04g23550 No alias basic helix-loop-helix family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_16489g0010 No alias (at5g57150 : 91.7) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
MA_196213g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_439607g0010 No alias (at1g12860 : 92.4) Encodes ICE2 (Inducer of CBF... 0.05 Orthogroups_2024-Update
PSME_00012853-RA No alias (at2g16910 : 88.2) Encodes a basic helix-loop helix... 0.07 Orthogroups_2024-Update
PSME_00047880-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Potri.006G074800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 198 239
No external refs found!