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  5. PSME_00048256-RA

PSME_00048256-RA


Description : (at1g09900 : 298.0) Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT3G04760.1); Has 67710 Blast hits to 15322 proteins in 310 species: Archae - 4; Bacteria - 73; Metazoa - 1094; Fungi - 1217; Plants - 62670; Viruses - 0; Other Eukaryotes - 2652 (source: NCBI BLink). & (q76c99|rf1_orysa : 264.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 596.0) & (original description: no original description)


Gene families : OG_42_0022279 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00048256-RA
Cluster HCCA clusters: Cluster_108


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 247 270
IPR002885 Pentatricopeptide_repeat 215 239
IPR002885 Pentatricopeptide_repeat 278 326
IPR002885 Pentatricopeptide_repeat 606 654
IPR002885 Pentatricopeptide_repeat 676 725
IPR002885 Pentatricopeptide_repeat 348 396
IPR002885 Pentatricopeptide_repeat 500 549
IPR002885 Pentatricopeptide_repeat 422 467
IPR002885 Pentatricopeptide_repeat 568 599
IPR002885 Pentatricopeptide_repeat 161 209
No external refs found!