PSME_00048302-RA

Description : (at3g04610 : 98.6) flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink). & (reliability: 186.4) & (original description: no original description)

Gene families : OG_42_0000691 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000691_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00048302-RA
Cluster	HCCA clusters: Cluster_370

Target	Alias	Description	ECC score	Gene Family Method
PSME_00006097-RA	No alias	(at3g04610 : 168.0) flowering locus KH domain (FLK);...	0.02	Orthogroups_2024-Update
PSME_00027738-RA	No alias	(at3g04610 : 116.0) flowering locus KH domain (FLK);...	0.02	Orthogroups_2024-Update
PSME_00040942-RA	No alias	(at4g26000 : 130.0) Encodes a novel Arabidopsis gene...	0.05	Orthogroups_2024-Update
PSME_00046118-RA	No alias	(at3g04610 : 167.0) flowering locus KH domain (FLK);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
MF	GO:0008017	microtubule binding	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	56	113

External Links

No external refs found!

PSME_00048302-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation