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  5. PSME_00048349-RA

PSME_00048349-RA


Description : (at5g48800 : 604.0) Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5ks50|nph3_orysa : 365.0) Coleoptile phototropism protein 1 (Non-phototropic hypocotyl 3-like protein) (NPH3-like protein) - Oryza sativa (Rice) & (reliability: 1208.0) & (original description: no original description)


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00048349-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
MA_7675g0010 No alias (at5g48800 : 618.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
PSME_00001436-RA No alias (at1g03010 : 601.0) Phototropic-responsive NPH3 family... 0.02 Orthogroups_2024-Update
Potri.002G209700 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Pp1s108_69V6 No alias protein binding 0.03 Orthogroups_2024-Update
Pp1s81_29V6 No alias transposon protein mutator sub-class 0.03 Orthogroups_2024-Update
Seita.2G207600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.6G074900.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 212 476
No external refs found!