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  5. PSME_00048386-RA

PSME_00048386-RA


Description : (at5g65700 : 218.0) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.; BARELY ANY MERISTEM 1 (BAM1); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1). & (p93194|rpk1_iponi : 192.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 410.0) & (original description: no original description)


Gene families : OG_42_0000035 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00048386-RA
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
171048 No alias HAESA-like 1 0.05 Orthogroups_2024-Update
96692 No alias HAESA-like 1 0.02 Orthogroups_2024-Update
A4A49_03495 No alias lrr receptor-like serinethreonine-protein kinase gso1 0.03 Orthogroups_2024-Update
A4A49_05403 No alias leucine-rich repeat receptor-like protein kinase tdr 0.03 Orthogroups_2024-Update
A4A49_21011 No alias receptor-like protein kinase 5 0.03 Orthogroups_2024-Update
A4A49_39903 No alias receptor-like protein kinase 5 0.04 Orthogroups_2024-Update
At5g25930 No alias Kinase family with leucine-rich repeat domain-containing... 0.03 Orthogroups_2024-Update
Bradi2g19380 No alias Protein kinase family protein with leucine-rich repeat domain 0.03 Orthogroups_2024-Update
Bradi2g49447 No alias Protein kinase family protein with leucine-rich repeat domain 0.03 Orthogroups_2024-Update
Bradi3g08660 No alias Protein kinase family protein with leucine-rich repeat domain 0.04 Orthogroups_2024-Update
Bradi3g28380 No alias Protein kinase family protein with leucine-rich repeat domain 0.03 Orthogroups_2024-Update
Bradi3g35137 No alias HAESA-like 1 0.04 Orthogroups_2024-Update
Bradi4g00900 No alias Leucine-rich receptor-like protein kinase family protein 0.04 Orthogroups_2024-Update
Brara.A02859.1 No alias PIP/PIPL peptide receptor *(RLK7) & LRR-XI protein... 0.02 Orthogroups_2024-Update
GRMZM2G002542 No alias Protein kinase family protein with leucine-rich repeat domain 0.03 Orthogroups_2024-Update
GRMZM2G112309 No alias Protein kinase family protein with leucine-rich repeat domain 0.04 Orthogroups_2024-Update
GRMZM2G132212 No alias Protein kinase family protein with leucine-rich repeat domain 0.03 Orthogroups_2024-Update
GRMZM2G177883 No alias Protein kinase family protein with leucine-rich repeat domain 0.02 Orthogroups_2024-Update
GRMZM2G391794 No alias Leucine-rich receptor-like protein kinase family protein 0.02 Orthogroups_2024-Update
Glyma.01G007400 No alias Protein kinase family protein with leucine-rich repeat domain 0.05 Orthogroups_2024-Update
Glyma.01G062900 No alias Leucine-rich repeat receptor-like protein kinase family protein 0.03 Orthogroups_2024-Update
Glyma.04G086700 No alias Protein kinase family protein with leucine-rich repeat domain 0.04 Orthogroups_2024-Update
Glyma.04G088800 No alias Leucine-rich receptor-like protein kinase family protein 0.05 Orthogroups_2024-Update
Glyma.06G090800 No alias Leucine-rich receptor-like protein kinase family protein 0.05 Orthogroups_2024-Update
Glyma.10G220700 No alias Leucine-rich receptor-like protein kinase family protein 0.03 Orthogroups_2024-Update
Glyma.13G253300 No alias Leucine-rich receptor-like protein kinase family protein 0.04 Orthogroups_2024-Update
Glyma.15G155600 No alias Leucine-rich repeat transmembrane protein kinase 0.05 Orthogroups_2024-Update
Glyma.16G210500 No alias Protein kinase family protein with leucine-rich repeat domain 0.05 Orthogroups_2024-Update
HORVU6Hr1G085710.2 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.02 Orthogroups_2024-Update
HORVU7Hr1G088430.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.02 Orthogroups_2024-Update
Kfl00539_0030 kfl00539_0030_v1.... (at1g53420 : 234.0) Leucine-rich repeat transmembrane... 0.03 Orthogroups_2024-Update
LOC_Os07g31500 No alias leucine-rich repeat receptor protein kinase EXS... 0.02 Orthogroups_2024-Update
MA_10429487g0010 No alias (at3g49670 : 122.0) Encodes a CLAVATA1-related receptor... 0.03 Orthogroups_2024-Update
MA_10432161g0010 No alias (at5g53890 : 286.0) Encodes a leucine-rich repeat... 0.04 Orthogroups_2024-Update
MA_10432894g0010 No alias (at1g09970 : 693.0) RLK7 belongs to a leucine-rich... 0.04 Orthogroups_2024-Update
MA_10437164g0020 No alias (at5g49660 : 385.0) Leucine-rich repeat transmembrane... 0.03 Orthogroups_2024-Update
MA_125869g0010 No alias (at5g49660 : 324.0) Leucine-rich repeat transmembrane... 0.04 Orthogroups_2024-Update
MA_135299g0010 No alias (at1g28440 : 622.0) HAESA-like 1 (HSL1); FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
MA_16314g0010 No alias (at1g28440 : 645.0) HAESA-like 1 (HSL1); FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
MA_216719g0010 No alias (at1g28440 : 686.0) HAESA-like 1 (HSL1); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
MA_251785g0010 No alias (at5g25930 : 590.0) Protein kinase family protein with... 0.03 Orthogroups_2024-Update
Mp1g23000.1 No alias Leucine-rich repeat receptor-like... 0.02 Orthogroups_2024-Update
PSME_00007823-RA No alias (at5g49660 : 565.0) Leucine-rich repeat transmembrane... 0.03 Orthogroups_2024-Update
PSME_00007824-RA No alias (at1g09970 : 736.0) RLK7 belongs to a leucine-rich... 0.03 Orthogroups_2024-Update
PSME_00028578-RA No alias (at1g09970 : 724.0) RLK7 belongs to a leucine-rich... 0.04 Orthogroups_2024-Update
PSME_00045902-RA No alias (at1g28440 : 739.0) HAESA-like 1 (HSL1); FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
PSME_00054391-RA No alias (at1g09970 : 753.0) RLK7 belongs to a leucine-rich... 0.06 Orthogroups_2024-Update
Potri.002G065400 No alias Protein kinase superfamily protein 0.04 Orthogroups_2024-Update
Potri.002G258400 No alias Protein kinase family protein with leucine-rich repeat domain 0.03 Orthogroups_2024-Update
Potri.006G235800 No alias Protein kinase family protein with leucine-rich repeat domain 0.05 Orthogroups_2024-Update
Potri.008G007600 No alias PEP1 receptor 1 0.02 Orthogroups_2024-Update
Potri.008G009300 No alias PEP1 receptor 1 0.05 Orthogroups_2024-Update
Potri.009G081800 No alias Leucine-rich receptor-like protein kinase family protein 0.06 Orthogroups_2024-Update
Potri.014G195100 No alias Protein kinase family protein with leucine-rich repeat domain 0.04 Orthogroups_2024-Update
Potri.018G088200 No alias Protein kinase family protein with leucine-rich repeat domain 0.06 Orthogroups_2024-Update
Seita.2G320400.1 No alias LRR-XI protein kinase & CIF/TWS1-peptide receptor *(GSO)... 0.03 Orthogroups_2024-Update
Seita.3G173800.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.05 Orthogroups_2024-Update
Seita.3G393400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G183100.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.03 Orthogroups_2024-Update
Seita.5G002800.1 No alias LRR-XI protein kinase & IDA/IDL-peptide receptor kinase... 0.03 Orthogroups_2024-Update
Seita.5G313300.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.05 Orthogroups_2024-Update
Seita.5G313400.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.03 Orthogroups_2024-Update
Sobic.001G224000.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
Sobic.003G291600.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.04 Orthogroups_2024-Update
Sobic.003G291700.1 No alias LRR-XV protein kinase & SCREW peptide receptor *(NUT) &... 0.06 Orthogroups_2024-Update
Sobic.004G028600.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.07 Orthogroups_2024-Update
Sobic.008G060200.1 No alias SCREW peptide receptor *(NUT) & EC_2.7 transferase... 0.05 Orthogroups_2024-Update
Sobic.008G060500.2 No alias SCREW peptide receptor *(NUT) & EC_2.7 transferase... 0.06 Orthogroups_2024-Update
Solyc01g106500 No alias Leucine-rich receptor-like protein kinase family protein... 0.02 Orthogroups_2024-Update
Solyc08g066210 No alias Receptor-like protein kinase (AHRD V3.3 *** A0A0K9PZN1_ZOSMR) 0.03 Orthogroups_2024-Update
Solyc08g066270 No alias kinase family with leucine-rich repeat domain-containing... 0.04 Orthogroups_2024-Update
Solyc12g008500 No alias Receptor-like protein kinase (AHRD V3.3 *** A0A0K9PZN1_ZOSMR) 0.03 Orthogroups_2024-Update
Sopen01g048860 No alias Protein kinase domain 0.02 Orthogroups_2024-Update
Sopen07g027550 No alias Protein kinase domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006468 protein phosphorylation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000719 Prot_kinase_dom 107 374
No external refs found!