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  5. PSME_00048402-RA

PSME_00048402-RA


Description : (at3g16830 : 103.0) TOPLESS-related 2 (TPR2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 3 (TAIR:AT5G27030.1); Has 13436 Blast hits to 8919 proteins in 512 species: Archae - 16; Bacteria - 3246; Metazoa - 4126; Fungi - 2976; Plants - 1389; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)


Gene families : OG_42_0000373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000373_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00048402-RA
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Brara.F01080.1 No alias auxin signalling transcriptional co-repressor *(TPL/TPR)... 0.02 Orthogroups_2024-Update
Glyma.19G230500 No alias TOPLESS-related 3 0.03 Orthogroups_2024-Update
PSME_00010700-RA No alias (at1g80490 : 190.0) TOPLESS-related 1 (TPR1); INVOLVED... 0.03 Orthogroups_2024-Update
PSME_00021651-RA No alias (at1g15750 : 397.0) Encodes a protein with several WD40... 0.02 Orthogroups_2024-Update
PSME_00049670-RA No alias (at5g27030 : 197.0) TOPLESS-related 3 (TPR3); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.018G023800 No alias TOPLESS-related 1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!