PSME_00048939-RA

Description : (at1g15890 : 95.5) Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink). & (reliability: 182.6) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00048939-RA
Cluster	HCCA clusters: Cluster_371

Target	Alias	Description	ECC score	Gene Family Method
407881	No alias	NB-ARC domain-containing disease resistance protein	0.04	Orthogroups_2024-Update
MA_837862g0010	No alias	(at5g63020 : 95.5) Disease resistance protein...	0.04	Orthogroups_2024-Update
MA_9432601g0010	No alias	(at5g63020 : 105.0) Disease resistance protein...	0.08	Orthogroups_2024-Update
PSME_00011883-RA	No alias	(at4g27220 : 218.0) NB-ARC domain-containing disease...	0.02	Orthogroups_2024-Update
PSME_00027916-RA	No alias	(at4g27220 : 83.6) NB-ARC domain-containing disease...	0.06	Orthogroups_2024-Update
PSME_00037442-RA	No alias	(at1g15890 : 222.0) Disease resistance protein...	0.02	Orthogroups_2024-Update
PSME_00040229-RA	No alias	(at1g12280 : 197.0) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
PSME_00043407-RA	No alias	(at4g26090 : 135.0) Encodes a plasma membrane protein...	0.06	Orthogroups_2024-Update
PSME_00051384-RA	No alias	(at1g63350 : 167.0) Disease resistance protein...	0.05	Orthogroups_2024-Update
PSME_00056632-RA	No alias	(at1g61310 : 186.0) LRR and NB-ARC domains-containing...	0.09	Orthogroups_2024-Update
PSME_00057017-RA	No alias	(at1g12280 : 226.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Predicted GO
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	171	288

External Links

No external refs found!

PSME_00048939-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation