PSME_00048986-RA

Description : (at1g25560 : 246.0) Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes.; TEMPRANILLO 1 (TEM1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: photoperiodism, flowering, ethylene mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to ABI3/VP1 2 (TAIR:AT1G68840.2); Has 6413 Blast hits to 6197 proteins in 270 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6380; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 492.0) & (original description: no original description)

Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00048986-RA
Cluster	HCCA clusters: Cluster_70

Target	Alias	Description	ECC score	Gene Family Method
At1g01030	No alias	NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]	0.03	Orthogroups_2024-Update
Bradi3g32140	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
GRMZM2G082227	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
Glyma.01G087500	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.02G099500	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.03G262200	No alias	AP2/B3-like transcriptional factor family protein	0.04	Orthogroups_2024-Update
Glyma.07G048200	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
Glyma.10G204400	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G010100.2	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.04	Orthogroups_2024-Update
HORVU3Hr1G064590.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G040620.2	No alias	RAV/NGATHA-type transcription factor	0.06	Orthogroups_2024-Update
LOC_Os01g04750	No alias	B3 DNA binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
MA_246350g0010	No alias	(at1g13260 : 168.0) Encodes an AP2/B3 domain...	0.03	Orthogroups_2024-Update
PSME_00021295-RA	No alias	(at1g13260 : 262.0) Encodes an AP2/B3 domain...	0.06	Orthogroups_2024-Update
PSME_00035556-RA	No alias	(at3g25730 : 293.0) ethylene response DNA binding factor...	0.06	Orthogroups_2024-Update
Potri.010G129200	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Seita.9G562700.1	No alias	RAV/NGATHA-type transcription factor	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006813	potassium ion transport	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	417	515
IPR001471	AP2/ERF_dom	722	769
IPR001471	AP2/ERF_dom	262	309

External Links

No external refs found!

PSME_00048986-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation