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  5. PSME_00049249-RA

PSME_00049249-RA


Description : (at5g54510 : 889.0) Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).; DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus, auxin mediated signaling pathway, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G27260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q8lqm5|gh31_orysa : 776.0) Probable indole-3-acetic acid-amido synthetase GH3.1 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 1) (OsGH3-1) - Oryza sativa (Rice) & (reliability: 1778.0) & (original description: no original description)


Gene families : OG_42_0000128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049249-RA
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_07196 No alias jasmonic acid-amido synthetase jar1 0.01 Orthogroups_2024-Update
A4A49_17823 No alias putative indole-3-acetic acid-amido synthetase gh3.1 0.01 Orthogroups_2024-Update
A4A49_27021 No alias putative indole-3-acetic acid-amido synthetase gh3.1 0.01 Orthogroups_2024-Update
A4A49_27230 No alias indole-3-acetic acid-amido synthetase gh3.6 0.01 Orthogroups_2024-Update
A4A49_35910 No alias jasmonic acid-amido synthetase jar1 0.02 Orthogroups_2024-Update
A4A49_36801 No alias indole-3-acetic acid-amido synthetase gh3.6 0.01 Orthogroups_2024-Update
At2g14960 No alias Probable indole-3-acetic acid-amido synthetase GH3.1... 0.03 Orthogroups_2024-Update
At2g47750 No alias Putative indole-3-acetic acid-amido synthetase GH3.9... 0.03 Orthogroups_2024-Update
Brara.B01373.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.01 Orthogroups_2024-Update
Brara.F00408.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os01g57610 No alias OsGH3.1 - Probable indole-3-acetic acid-amido... 0.02 Orthogroups_2024-Update
PSME_00043353-RA No alias (at5g54510 : 867.0) Encodes an IAA-amido synthase that... 0.02 Orthogroups_2024-Update
PSME_00049441-RA No alias (at5g54510 : 883.0) Encodes an IAA-amido synthase that... 0.01 Orthogroups_2024-Update
Sobic.003G306500.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.01 Orthogroups_2024-Update
Sopen07g031970 No alias GH3 auxin-responsive promoter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004993 GH3 22 595
No external refs found!