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  5. PSME_00049278-RA

PSME_00049278-RA


Description : (at5g40390 : 807.0) Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.; seed imbibition 1-like (SIP1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, galactinol-sucrose galactosyltransferase activity; INVOLVED IN: mannitol biosynthetic process, raffinose family oligosaccharide biosynthetic process, response to water deprivation, sucrose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: Raffinose synthase family protein (TAIR:AT5G20250.4); Has 508 Blast hits to 470 proteins in 135 species: Archae - 27; Bacteria - 74; Metazoa - 0; Fungi - 82; Plants - 317; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (q93xk2|stsyn_pea : 634.0) Stachyose synthase precursor (EC 2.4.1.67) (Galactinol--raffinose galactosyltransferase) - Pisum sativum (Garden pea) & (reliability: 1614.0) & (original description: no original description)


Gene families : OG_42_0000676 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000676_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049278-RA
Cluster HCCA clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
A4A49_20430 No alias putative galactinol--sucrose galactosyltransferase 2 0.02 Orthogroups_2024-Update
A4A49_36463 No alias putative galactinol--sucrose galactosyltransferase 6 0.02 Orthogroups_2024-Update
At3g57520 No alias Probable galactinol--sucrose galactosyltransferase 2... 0.03 Orthogroups_2024-Update
Bradi1g48050 No alias Raffinose synthase family protein 0.03 Orthogroups_2024-Update
LOC_Os01g07530 No alias uncharacterized glycosyltransferase, putative, expressed 0.02 Orthogroups_2024-Update
MA_14051g0010 No alias (at3g57520 : 615.0) seed imbibition 2 (SIP2); CONTAINS... 0.05 Orthogroups_2024-Update
MA_18317g0010 No alias (at5g20250 : 863.0) encodes a member of glycosyl... 0.03 Orthogroups_2024-Update
Potri.016G054700 No alias seed imbibition 2 0.02 Orthogroups_2024-Update
Sobic.010G057300.1 No alias galactinol-sucrose galactosyltransferase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR008811 Glycosyl_hydrolases_36 22 611
IPR008811 Glycosyl_hydrolases_36 618 736
No external refs found!