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  5. PSME_00049440-RA

PSME_00049440-RA


Description : (at4g31850 : 426.0) encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs; proton gradient regulation 3 (PGR3); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 108367 Blast hits to 15783 proteins in 329 species: Archae - 17; Bacteria - 129; Metazoa - 1401; Fungi - 2165; Plants - 100462; Viruses - 0; Other Eukaryotes - 4193 (source: NCBI BLink). & (q76c99|rf1_orysa : 332.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 852.0) & (original description: no original description)


Gene families : OG_42_0129824 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049440-RA
Cluster HCCA clusters: Cluster_48


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1160 1187
IPR002885 Pentatricopeptide_repeat 566 594
IPR002885 Pentatricopeptide_repeat 2 26
IPR002885 Pentatricopeptide_repeat 911 960
IPR002885 Pentatricopeptide_repeat 598 645
IPR002885 Pentatricopeptide_repeat 169 218
IPR002885 Pentatricopeptide_repeat 29 78
IPR002885 Pentatricopeptide_repeat 736 785
IPR002885 Pentatricopeptide_repeat 239 286
IPR002885 Pentatricopeptide_repeat 99 148
IPR002885 Pentatricopeptide_repeat 1086 1135
IPR002885 Pentatricopeptide_repeat 415 462
IPR002885 Pentatricopeptide_repeat 841 890
IPR002885 Pentatricopeptide_repeat 670 715
IPR002885 Pentatricopeptide_repeat 1016 1065
IPR002885 Pentatricopeptide_repeat 341 368
IPR002885 Pentatricopeptide_repeat 307 339
IPR002885 Pentatricopeptide_repeat 376 408
IPR002885 Pentatricopeptide_repeat 805 832
IPR002885 Pentatricopeptide_repeat 982 1009
No external refs found!