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  5. PSME_00049504-RA

PSME_00049504-RA


Description : (at5g60710 : 408.0) Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 816.0) & (original description: no original description)


Gene families : OG_42_0000384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000384_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049504-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
At5g60710 No alias Retroelement pol polyprotein-like... 0.03 Orthogroups_2024-Update
GRMZM2G094602 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
Glyma.01G097900 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
MA_17431g0010 No alias (at5g60710 : 407.0) Zinc finger (C3HC4-type RING finger)... 0.04 Orthogroups_2024-Update
PSME_00047144-RA No alias (at2g38970 : 509.0) Zinc finger (C3HC4-type RING finger)... 0.04 Orthogroups_2024-Update
Potri.001G082150 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
Potri.008G038450 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
Sobic.001G227000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G508600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g076860 No alias Zinc finger (C3HC4-type RING finger) family protein... 0.03 Orthogroups_2024-Update
Sopen02g018610 No alias von Willebrand factor type A domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 158 187
IPR002035 VWF_A 390 567
No external refs found!