PSME_00049694-RA

Description : (at2g18060 : 259.0) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.; vascular related NAC-domain protein 1 (VND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 76 (TAIR:AT4G36160.1); Has 3025 Blast hits to 3020 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3025; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q5z6b6|nac76_orysa : 186.0) NAC domain-containing protein 76 (ONAC076) - Oryza sativa (Rice) & (reliability: 518.0) & (original description: no original description)

Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00049694-RA
Cluster	HCCA clusters: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11542	No alias	nac domain-containing protein 37	0.02	Orthogroups_2024-Update
A4A49_30240	No alias	nac domain-containing protein 79	0.04	Orthogroups_2024-Update
A4A49_58267	No alias	hypothetical protein	0.02	Orthogroups_2024-Update
At1g65910	No alias	NAC028 [Source:UniProtKB/TrEMBL;Acc:A0A178W7T7]	0.03	Orthogroups_2024-Update
At2g24430	No alias	NAC domain containing protein 38...	0.03	Orthogroups_2024-Update
At2g27300	No alias	NAC domain-containing protein 40...	0.03	Orthogroups_2024-Update
At3g15170	No alias	CUC1 [Source:UniProtKB/TrEMBL;Acc:A0A178V703]	0.04	Orthogroups_2024-Update
At3g17730	No alias	NAC domain containing protein 57...	0.02	Orthogroups_2024-Update
At3g49530	No alias	NAC domain-containing protein 62...	0.02	Orthogroups_2024-Update
At3g61910	No alias	NAC domain-containing protein 66...	0.02	Orthogroups_2024-Update
At5g46590	No alias	NAC domain-containing protein 96...	0.02	Orthogroups_2024-Update
Bradi1g17440	No alias	Arabidopsis NAC domain containing protein 87	0.04	Orthogroups_2024-Update
Bradi3g13727	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Bradi3g33957	No alias	NAC domain containing protein 71	0.03	Orthogroups_2024-Update
Brara.A00921.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.A03837.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.C03560.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.D01471.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.E01767.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G00213.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I02350.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.J01736.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G440219	No alias	NAC 007	0.03	Orthogroups_2024-Update
Glyma.06G014900	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Glyma.08G163100	No alias	NAC domain containing protein 20	0.03	Orthogroups_2024-Update
HORVU2Hr1G017400.3	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G033990.3	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os08g01330	No alias	no apical meristem protein, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00030678-RA	No alias	(at1g65910 : 262.0) NAC domain containing protein 28...	0.04	Orthogroups_2024-Update
Potri.001G144400	No alias	NAC domain containing protein 96	0.02	Orthogroups_2024-Update
Potri.010G176600	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.011G153300	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.012G001400	No alias	NAC domain containing protein 100	0.02	Orthogroups_2024-Update
Potri.015G046800	No alias	NAC domain containing protein 58	0.02	Orthogroups_2024-Update
Pp1s102_187V6	No alias	nac domain ipr003441	0.02	Orthogroups_2024-Update
Sobic.006G281900.3	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.010G155000.2	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.010G155100.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Solyc06g065410	No alias	NAC domain-containing protein, putative (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
Solyc10g005010	No alias	NAC domain-containing protein, putative (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen06g029400	No alias	No apical meristem (NAM) protein	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Predicted GO
MF	GO:0004970	ionotropic glutamate receptor activity	IEP	Predicted GO
MF	GO:0005230	extracellular ligand-gated ion channel activity	IEP	Predicted GO
BP	GO:0007062	sister chromatid cohesion	IEP	Predicted GO
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Predicted GO
MF	GO:0008066	glutamate receptor activity	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
BP	GO:0022402	cell cycle process	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022824	transmitter-gated ion channel activity	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022835	transmitter-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
MF	GO:0030594	neurotransmitter receptor activity	IEP	Predicted GO
CC	GO:0031390	Ctf18 RFC-like complex	IEP	Predicted GO
MF	GO:0038023	signaling receptor activity	IEP	Predicted GO
MF	GO:0060089	molecular transducer activity	IEP	Predicted GO
BP	GO:1903047	mitotic cell cycle process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	17	122

External Links

No external refs found!

PSME_00049694-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation