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  5. PSME_00049730-RA

PSME_00049730-RA


Description : (at5g14230 : 540.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 1080.0) & (original description: no original description)


Gene families : OG_42_0001604 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001604_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049730-RA
Cluster HCCA clusters: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
PSME_00005487-RA No alias (at5g14230 : 507.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.03 Orthogroups_2024-Update
PSME_00030805-RA No alias (at5g14230 : 489.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.04 Orthogroups_2024-Update
PSME_00042173-RA No alias (at5g14230 : 470.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.06 Orthogroups_2024-Update
PSME_00043239-RA No alias (at5g14230 : 514.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.04 Orthogroups_2024-Update
PSME_00043290-RA No alias (at5g14230 : 444.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006450 regulation of translational fidelity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 191 273
IPR020683 Ankyrin_rpt-contain_dom 304 378
No external refs found!