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  5. PSME_00049738-RA

PSME_00049738-RA


Description : (at2g33880 : 103.0) Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. Overexpression can partially rescue the triple mutant cytokinin receptor phenotype suggesting HB-3 is a downstream effector of cytokinin signaling.; homeobox-3 (HB-3); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 8 (TAIR:AT5G45980.1); Has 671 Blast hits to 615 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 22; Plants - 589; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)


Gene families : OG_42_0001600 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001600_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049738-RA
Cluster HCCA clusters: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
Brara.B02865.1 No alias WOX-type transcription factor 0.03 Orthogroups_2024-Update
Brara.C01724.1 No alias WOX-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.07G203000 No alias WUSCHEL related homeobox 8 0.04 Orthogroups_2024-Update
Glyma.10G069700 No alias WUSCHEL related homeobox 8 0.04 Orthogroups_2024-Update
Glyma.13G172700 No alias homeobox-3 0.05 Orthogroups_2024-Update
PSME_00019221-RA No alias (at5g45980 : 154.0) Arabidopsis thaliana WOX8 protein.... 0.05 Orthogroups_2024-Update
PSME_00052135-RA No alias (at4g02050 : 119.0) sugar transporter protein 7 (STP7);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 23 83
No external refs found!