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  5. PSME_00049951-RA

PSME_00049951-RA


Description : (at5g63860 : 92.8) UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.; UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 185.6) & (original description: no original description)


Gene families : OG_42_0004862 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004862_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00049951-RA
Cluster HCCA clusters: Cluster_844

Target Alias Description ECC score Gene Family Method Actions
PSME_00015596-RA No alias (at5g03760 : 193.0) encodes a beta-mannan synthase that... 0.03 Orthogroups_2024-Update
PSME_00021717-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00024053-RA No alias (at2g46210 : 122.0) Fatty acid/sphingolipid desaturase;... 0.01 Orthogroups_2024-Update
PSME_00034014-RA No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00047203-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00049462-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 71 121
IPR000408 Reg_chr_condens 18 67
No external refs found!