1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00050087-RA

PSME_00050087-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000435 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050087-RA
Cluster HCCA clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
A4A49_18487 No alias transcription factor bhlh120 0.03 Orthogroups_2024-Update
PSME_00004971-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00012481-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00019232-RA No alias (at5g51790 : 82.4) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
PSME_00027146-RA No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
PSME_00029446-RA No alias (at1g12540 : 86.7) basic helix-loop-helix (bHLH)... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 134 182
No external refs found!