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  5. PSME_00050134-RA

PSME_00050134-RA


Description : (at5g19790 : 92.0) encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.; related to AP2 11 (RAP2.11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root hair, epidermis, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 184.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050134-RA
Cluster HCCA clusters: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
68470 No alias ethylene responsive element binding factor 1 0.02 Orthogroups_2024-Update
80895 No alias ethylene responsive element binding factor 2 0.03 Orthogroups_2024-Update
92334 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
A4A49_13998 No alias ethylene-responsive transcription factor 4 0.02 Orthogroups_2024-Update
A4A49_16579 No alias ethylene-responsive transcription factor abr1 0.03 Orthogroups_2024-Update
A4A49_16759 No alias ethylene-responsive transcription factor erf012 0.03 Orthogroups_2024-Update
A4A49_23921 No alias ethylene-responsive transcription factor erf034 0.02 Orthogroups_2024-Update
A4A49_27754 No alias ethylene-responsive transcription factor 1a 0.03 Orthogroups_2024-Update
A4A49_38622 No alias dehydration-responsive element-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_39586 No alias ethylene-responsive transcription factor erf106 0.03 Orthogroups_2024-Update
A4A49_42272 No alias ethylene-responsive transcription factor 4 0.03 Orthogroups_2024-Update
At1g28360 No alias Ethylene-responsive transcription factor 12... 0.03 Orthogroups_2024-Update
At2g20880 No alias Ethylene-responsive transcription factor ERF053... 0.04 Orthogroups_2024-Update
At2g23340 No alias Ethylene-responsive transcription factor ERF008... 0.02 Orthogroups_2024-Update
At4g17500 No alias Ethylene-responsive transcription factor 1A... 0.03 Orthogroups_2024-Update
Bradi1g36590 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g29960 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g49810 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g03371 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Brara.A00653.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A00881.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.A01788.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.B00253.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.B03207.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Brara.C00211.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Brara.D00707.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.G03123.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
GRMZM2G057386 No alias ethylene responsive element binding factor 5 0.03 Orthogroups_2024-Update
GRMZM2G066158 No alias ERF domain protein 12 0.03 Orthogroups_2024-Update
GRMZM2G124011 No alias dehydration response element B1A 0.03 Orthogroups_2024-Update
GRMZM2G175543 No alias ethylene responsive element binding factor 4 0.03 Orthogroups_2024-Update
Glyma.02G039300 No alias DORNROSCHEN-like 0.03 Orthogroups_2024-Update
Glyma.07G250100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G137600 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G216600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G233800 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G007000 No alias ethylene response factor 1 0.03 Orthogroups_2024-Update
Glyma.10G119100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G056200 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G240100 No alias related to AP2 1 0.03 Orthogroups_2024-Update
Glyma.19G164100 No alias ethylene response factor 1 0.02 Orthogroups_2024-Update
Glyma.20G115300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G055710.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
HORVU1Hr1G070410.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G094780.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G098330.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G080340.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G062380.3 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g43820 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g46400 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g37640 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os06g09717 No alias ethylene-responsive transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39810 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g41130 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_108992g0010 No alias (at1g74930 : 121.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_115348g0020 No alias (at4g17500 : 116.0) Encodes a member of the ERF... 0.04 Orthogroups_2024-Update
MA_116185g0010 No alias (at5g61600 : 90.9) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_201698g0010 No alias (at5g11590 : 124.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_2446g0010 No alias (at2g20880 : 136.0) Integrase-type DNA-binding... 0.06 Orthogroups_2024-Update
MA_4929994g0010 No alias (original description: no original description) 0.04 Orthogroups_2024-Update
MA_54341g0010 No alias (at1g15360 : 131.0) Encodes a member of the ERF... 0.04 Orthogroups_2024-Update
MA_65190g0010 No alias (at5g19790 : 91.3) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_67841g0010 No alias (at2g44940 : 151.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_71018g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_83118g0010 No alias (at1g78080 : 90.5) Encodes a member of the DREB... 0.05 Orthogroups_2024-Update
PSME_00004892-RA No alias (at1g19210 : 123.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00008891-RA No alias (at4g17500 : 93.6) Encodes a member of the ERF (ethylene... 0.04 Orthogroups_2024-Update
Potri.001G154200 No alias ethylene responsive element binding factor 5 0.03 Orthogroups_2024-Update
Potri.002G039300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G050700 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.003G079300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G150800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G162500 No alias related to AP2 6l 0.04 Orthogroups_2024-Update
Potri.003G220200 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.005G233300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G104200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G138700 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G046600 No alias DORNROSCHEN-like 0.02 Orthogroups_2024-Update
Potri.010G072600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G099900 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G055400 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s133_11V6 No alias c-repeat binding factor 4 0.02 Orthogroups_2024-Update
Pp1s90_184V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.1G248300.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Seita.1G257300.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.1G271000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G156200.1 No alias subgroup ERF-IX transcription factor 0.05 Orthogroups_2024-Update
Seita.2G215500.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
Seita.3G289200.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.06 Orthogroups_2024-Update
Seita.7G188500.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Seita.8G098100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G212000.1 No alias subgroup ERF-VII transcription factor & transcription... 0.02 Orthogroups_2024-Update
Sobic.002G415600.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
Sobic.004G295500.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Sobic.005G103100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G080200.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G184700.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G210300.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Sobic.007G077001.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G077200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G077300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G184400.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Solyc01g090560 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc02g077840 No alias Ethylene-responsive transcription factor, putative (AHRD... 0.03 Orthogroups_2024-Update
Solyc05g052040 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc07g054220 No alias Ethylene-responsive transcription factor ERF053 (AHRD... 0.03 Orthogroups_2024-Update
Solyc10g076370 No alias Dehydration-responsive element binding protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g049560 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen00g003270 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen01g036330 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen02g033000 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen02g037700 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen04g024720 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen04g032240 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen05g030960 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen07g028150 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 100 149
No external refs found!