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  5. PSME_00050135-RA

PSME_00050135-RA


Description : (at2g13600 : 432.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 108.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 864.0) & (original description: no original description)


Gene families : OG_42_0004020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050135-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
86162 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At1g09190 No alias Pentatricopeptide repeat-containing protein At1g09190... 0.03 Orthogroups_2024-Update
At2g21090 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.03 Orthogroups_2024-Update
Bradi4g35376 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.D01246.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E00798.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g042040 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 211 241
IPR002885 Pentatricopeptide_repeat 415 439
IPR002885 Pentatricopeptide_repeat 242 270
IPR002885 Pentatricopeptide_repeat 183 210
IPR002885 Pentatricopeptide_repeat 341 389
IPR002885 Pentatricopeptide_repeat 107 151
No external refs found!