Description : (at4g13650 : 719.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 130.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1438.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00050145-RA | |
Cluster | HCCA clusters: Cluster_110 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
442088 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
A4A49_32855 | No alias | pentatricopeptide repeat-containing protein, mitochondrial | 0.02 | Orthogroups_2024-Update | |
At2g34400 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | Orthogroups_2024-Update | |
Bradi1g06766 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.C03980.1 | No alias | RNA editing factor *(MEF25) | 0.02 | Orthogroups_2024-Update | |
Brara.F03349.1 | No alias | RNA editing factor *(REME1) & RNA editing factor *(OTP87) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G481373 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM5G811022 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.03G205100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.09G286100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.15G156600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G193700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G015630.5 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU6Hr1G027560.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
MA_10157572g0010 | No alias | (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_14381g0010 | No alias | (at3g12770 : 611.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_183738g0010 | No alias | (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_86628g0010 | No alias | (at1g11290 : 652.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00003038-RA | No alias | (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... | 0.01 | Orthogroups_2024-Update | |
PSME_00010952-RA | No alias | (at4g21065 : 218.0) Tetratricopeptide repeat (TPR)-like... | 0.01 | Orthogroups_2024-Update | |
Seita.4G168200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G057100.1 | No alias | RNA editing factor *(OTP85) | 0.03 | Orthogroups_2024-Update | |
Solyc06g076900 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
Sopen03g002990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0004506 | squalene monooxygenase activity | IEP | Predicted GO |
MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005244 | voltage-gated ion channel activity | IEP | Predicted GO |
MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Predicted GO |
MF | GO:0005253 | anion channel activity | IEP | Predicted GO |
MF | GO:0005254 | chloride channel activity | IEP | Predicted GO |
BP | GO:0006281 | DNA repair | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006821 | chloride transport | IEP | Predicted GO |
MF | GO:0008308 | voltage-gated anion channel activity | IEP | Predicted GO |
BP | GO:0009314 | response to radiation | IEP | Predicted GO |
BP | GO:0009416 | response to light stimulus | IEP | Predicted GO |
BP | GO:0009581 | detection of external stimulus | IEP | Predicted GO |
BP | GO:0009582 | detection of abiotic stimulus | IEP | Predicted GO |
BP | GO:0009583 | detection of light stimulus | IEP | Predicted GO |
BP | GO:0009584 | detection of visible light | IEP | Predicted GO |
BP | GO:0009605 | response to external stimulus | IEP | Predicted GO |
MF | GO:0010181 | FMN binding | IEP | Predicted GO |
MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0016759 | cellulose synthase activity | IEP | Predicted GO |
MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEP | Predicted GO |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0018298 | protein-chromophore linkage | IEP | Predicted GO |
MF | GO:0022832 | voltage-gated channel activity | IEP | Predicted GO |
BP | GO:0030243 | cellulose metabolic process | IEP | Predicted GO |
BP | GO:0030244 | cellulose biosynthetic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0051606 | detection of stimulus | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 1036 | 1159 |
IPR002885 | Pentatricopeptide_repeat | 155 | 201 |
IPR002885 | Pentatricopeptide_repeat | 256 | 300 |
IPR002885 | Pentatricopeptide_repeat | 861 | 908 |
IPR002885 | Pentatricopeptide_repeat | 457 | 505 |
IPR002885 | Pentatricopeptide_repeat | 761 | 808 |
IPR002885 | Pentatricopeptide_repeat | 558 | 606 |
IPR002885 | Pentatricopeptide_repeat | 360 | 385 |
IPR002885 | Pentatricopeptide_repeat | 937 | 960 |
IPR002885 | Pentatricopeptide_repeat | 336 | 357 |
No external refs found! |