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  5. PSME_00050173-RA

PSME_00050173-RA


Description : (at3g17450 : 133.0) hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description)


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050173-RA
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Bradi2g40156 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.04G117600 No alias hAT transposon superfamily 0.03 Orthogroups_2024-Update
Glyma.10G113200 No alias hAT transposon superfamily 0.03 Orthogroups_2024-Update
MA_72912g0030 No alias (at5g33406 : 155.0) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update
PSME_00013080-RA No alias (at5g33406 : 95.1) hAT dimerisation domain-containing... 0.04 Orthogroups_2024-Update
PSME_00041191-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00057200-RA No alias (at5g33406 : 93.6) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update
Solyc03g007510 No alias hAT transposon superfamily (AHRD V3.3 *** AT1G79740.4) 0.04 Orthogroups_2024-Update
Solyc04g056300 No alias No description available 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR007021 DUF659 15 83
No external refs found!