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  5. PSME_00050289-RA

PSME_00050289-RA


Description : (q8s857|h2av2_orysa : 174.0) Probable histone H2A variant 2 - Oryza sativa (Rice) & (at3g54560 : 170.0) Encodes HTA11, a histone H2A protein.; histone H2A 11 (HTA11); FUNCTIONS IN: DNA binding; INVOLVED IN: flower development, detection of temperature stimulus, defense response to bacterium; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 8 (TAIR:AT2G38810.2); Has 3864 Blast hits to 3859 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2525; Fungi - 296; Plants - 612; Viruses - 2; Other Eukaryotes - 429 (source: NCBI BLink). & (reliability: 340.0) & (original description: no original description)


Gene families : OG_42_0002563 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002563_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050289-RA

Target Alias Description ECC score Gene Family Method Actions
Solyc05g013780 No alias Myosin heavy chain, putative (AHRD V3.3 *** A0A072TT98_MEDTR) 0.02 Orthogroups_2024-Update
Sopen05g008700 No alias hypothetical protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 114 189
No external refs found!