PSME_00050349-RA

Description : (p52403|chi1_soltu : 337.0) Endochitinase 1 precursor (EC 3.2.1.14) (Fragment) - Solanum tuberosum (Potato) & (at3g12500 : 327.0) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.; basic chitinase (HCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2944 Blast hits to 2653 proteins in 549 species: Archae - 0; Bacteria - 615; Metazoa - 38; Fungi - 228; Plants - 1922; Viruses - 10; Other Eukaryotes - 131 (source: NCBI BLink). & (reliability: 654.0) & (original description: no original description)

Gene families : OG_42_0000472 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000472_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00050349-RA
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
443112	No alias	basic chitinase	0.05	Orthogroups_2024-Update
446851	No alias	basic chitinase	0.04	Orthogroups_2024-Update
A4A49_00786	No alias	acidic endochitinase q	0.08	Orthogroups_2024-Update
A4A49_31315	No alias	endochitinase b	0.07	Orthogroups_2024-Update
Bradi2g26000	No alias	basic chitinase	0.02	Orthogroups_2024-Update
Bradi2g47210	No alias	basic chitinase	0.05	Orthogroups_2024-Update
Bradi3g32340	No alias	basic chitinase	0.03	Orthogroups_2024-Update
Brara.C03413.1	No alias	basic chitinase *(CHIB)	0.04	Orthogroups_2024-Update
Brara.E02849.1	No alias	basic chitinase *(CHIB)	0.02	Orthogroups_2024-Update
GRMZM2G064360	No alias	Chitinase family protein	0.03	Orthogroups_2024-Update
GRMZM2G099454	No alias	basic chitinase	0.04	Orthogroups_2024-Update
GRMZM2G103668	No alias	basic chitinase	0.04	Orthogroups_2024-Update
Glyma.16G119200	No alias	basic chitinase	0.03	Orthogroups_2024-Update
Glyma.19G221800	No alias	Chitinase family protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G017670.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU1Hr1G052430.6	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU1Hr1G062030.1	No alias	basic chitinase *(CHIB)	0.03	Orthogroups_2024-Update
HORVU3Hr1G064470.3	No alias	basic chitinase *(CHIB)	0.02	Orthogroups_2024-Update
Kfl00092_0160	kfl00092_0160_v1.1	(p21226\|chi2_pea : 284.0) Endochitinase A2 precursor (EC...	0.01	Orthogroups_2024-Update
LOC_Os03g04060	No alias	CHIT16 - Chitinase family protein precursor, expressed	0.03	Orthogroups_2024-Update
LOC_Os05g04690	No alias	CHIT11 - Chitinase family protein precursor, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g51060	No alias	CHIT8 - Chitinase family protein precursor, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g39680	No alias	CHIT14 - Chitinase family protein precursor, expressed	0.04	Orthogroups_2024-Update
MA_10313114g0010	No alias	(p24626\|chi1_orysa : 327.0) Basic endochitinase 1...	0.03	Orthogroups_2024-Update
MA_8921185g0010	No alias	(q9frv0\|chic_secce : 129.0) Basic endochitinase C...	0.05	Orthogroups_2024-Update
Mp4g20440.1	No alias	Endochitinase 1 OS=Theobroma cacao (sp\|q41596\|chi1_thecc : 235.0)	0.02	Orthogroups_2024-Update
Mp4g20450.1	No alias	Endochitinase 1 OS=Theobroma cacao (sp\|q41596\|chi1_thecc : 229.0)	0.04	Orthogroups_2024-Update
Mp4g20470.1	No alias	Basic endochitinase B OS=Arabidopsis thaliana...	0.04	Orthogroups_2024-Update
Mp5g02510.1	No alias	no description available(sp\|q949h3\|chi1_hevbr : 195.0)	0.02	Orthogroups_2024-Update
PSME_00012567-RA	No alias	(p51613\|chib_vitvi : 374.0) Basic endochitinase...	0.04	Orthogroups_2024-Update
PSME_00012569-RA	No alias	(p17514\|chiq_tobac : 260.0) Acidic endochitinase Q...	0.07	Orthogroups_2024-Update
PSME_00031474-RA	No alias	(p17514\|chiq_tobac : 250.0) Acidic endochitinase Q...	0.04	Orthogroups_2024-Update
PSME_00053283-RA	No alias	(p51613\|chib_vitvi : 425.0) Basic endochitinase...	0.05	Orthogroups_2024-Update
Potri.004G182000	No alias	basic chitinase	0.03	Orthogroups_2024-Update
Potri.014G111800	No alias	Chitinase family protein	0.04	Orthogroups_2024-Update
Potri.T175200	No alias	basic chitinase	0.05	Orthogroups_2024-Update
Pp1s134_173V6	No alias	chitinase	0.02	Orthogroups_2024-Update
Seita.4G286000.1	No alias	basic chitinase *(CHIB)	0.05	Orthogroups_2024-Update
Sobic.001G516000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.009G012100.1	No alias	basic chitinase *(CHIB)	0.02	Orthogroups_2024-Update
Solyc02g082920	No alias	acidic extracellular 26 kD chitinase	0.03	Orthogroups_2024-Update
Solyc10g055780	No alias	Endochitinase (Chitinase) (AHRD V3.3 *** Q43184_SOLTU)	0.03	Orthogroups_2024-Update
Solyc10g055820	No alias	Chitinase (AHRD V3.3 *** B9VRK7_CAPAN)	0.05	Orthogroups_2024-Update
Solyc10g074440	No alias	Chitinase (AHRD V3.3 *** B9VRK7_CAPAN)	0.06	Orthogroups_2024-Update
Sopen02g027710	No alias	Chitinase class I	0.04	Orthogroups_2024-Update
Sopen02g027750	No alias	Chitinase class I	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	InterProScan predictions
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008061	chitin binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	InterProScan predictions
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004556	alpha-amylase activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
BP	GO:0006952	defense response	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009607	response to biotic stimulus	IEP	Predicted GO
BP	GO:0009617	response to bacterium	IEP	Predicted GO
BP	GO:0009620	response to fungus	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0042742	defense response to bacterium	IEP	Predicted GO
BP	GO:0043207	response to external biotic stimulus	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO
BP	GO:0050832	defense response to fungus	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0051704	multi-organism process	IEP	Predicted GO
BP	GO:0051707	response to other organism	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
BP	GO:0098542	defense response to other organism	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	104	337
IPR001002	Chitin-bd_1	37	73

External Links

No external refs found!

PSME_00050349-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation