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  5. Sopen06g015340

Sopen06g015340


Description : Retrotransposon gag protein


Gene families : OG_42_0001127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g015340
Cluster HCCA clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
evm.model.contig_2390.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_2498.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3711.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3777.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_4579.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_4650.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 137 230
No external refs found!