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  5. PSME_00050582-RA

PSME_00050582-RA


Description : (at5g53950 : 267.0) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.; CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5cd17|nac77_orysa : 225.0) NAC domain-containing protein 77 (ONAC077) (ONAC300) - Oryza sativa (Rice) & (reliability: 506.0) & (original description: no original description)


Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050582-RA

Target Alias Description ECC score Gene Family Method Actions
Brara.G01456.1 No alias NAC-type transcription factor 0.05 Orthogroups_2024-Update
Glyma.11G030600 No alias NAC 007 0.03 Orthogroups_2024-Update
PSME_00006177-RA No alias (at5g53950 : 292.0) Transcriptional activator of the NAC... 0.05 Orthogroups_2024-Update
Pp1s161_73V6 No alias nac domain-containing 0.02 Orthogroups_2024-Update
Sobic.004G112200.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Solyc05g055470 No alias NAC domain protein, (AHRD V3.3 *** A0A061FNG1_THECC) 0.03 Orthogroups_2024-Update
Solyc06g069710 No alias NAC domain protein, (AHRD V3.3 *** A0A061FWI7_THECC) 0.04 Orthogroups_2024-Update
Solyc08g008660 No alias NAC domain-containing protein, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Sopen03g028890 No alias No apical meristem (NAM) protein 0.04 Orthogroups_2024-Update
Sopen05g033920 No alias No apical meristem (NAM) protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003441 NAC-dom 19 145
No external refs found!