PSME_00050693-RA


Description : (at4g27230 : 166.0) Encodes HTA2, a histone H2A protein.; histone H2A 2 (HTA2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G54640.1). & (q84nj4|h2a3_orysa : 166.0) Probable histone H2A.3 - Oryza sativa (Rice) & (reliability: 332.0) & (original description: no original description)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050693-RA
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G041381 No alias histone H2A 2 0.02 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.02 Orthogroups_2024-Update
HORVU2Hr1G043860.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
MA_427046g0010 No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.02 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.02 Orthogroups_2024-Update
Mp2g00760.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.09 Orthogroups_2024-Update
PSME_00033660-RA No alias (p40280|h2a_maize : 149.0) Histone H2A - Zea mays... 0.09 Orthogroups_2024-Update
PSME_00034360-RA No alias (q94e96|h2a5_orysa : 203.0) Probable histone H2A.5 -... 0.02 Orthogroups_2024-Update
Potri.005G026500 No alias histone H2A 7 0.01 Orthogroups_2024-Update
Potri.006G082300 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.01 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.01 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.01 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.01 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.01 Orthogroups_2024-Update
Solyc11g073260 No alias Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) 0.01 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.01 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 43 123
IPR032454 Histone_H2A_C 126 160
No external refs found!