Description : (at4g27230 : 166.0) Encodes HTA2, a histone H2A protein.; histone H2A 2 (HTA2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G54640.1). & (q84nj4|h2a3_orysa : 166.0) Probable histone H2A.3 - Oryza sativa (Rice) & (reliability: 332.0) & (original description: no original description)
Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00050693-RA | |
Cluster | HCCA clusters: Cluster_92 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GRMZM2G041381 | No alias | histone H2A 2 | 0.02 | Orthogroups_2024-Update | |
GRMZM2G151726 | No alias | histone H2A 2 | 0.02 | Orthogroups_2024-Update | |
HORVU2Hr1G043860.1 | No alias | histone *(H2A) | 0.02 | Orthogroups_2024-Update | |
HORVU7Hr1G100100.3 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G100110.4 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G100120.13 | No alias | histone *(H2A) | 0.02 | Orthogroups_2024-Update | |
MA_22203g0020 | No alias | (at5g54640 : 145.0) Isolated from T-DNA insertion line,... | 0.02 | Orthogroups_2024-Update | |
MA_427046g0010 | No alias | (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... | 0.02 | Orthogroups_2024-Update | |
MA_7320190g0010 | No alias | (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... | 0.02 | Orthogroups_2024-Update | |
Mp2g00760.1 | No alias | histone (H2A) | 0.02 | Orthogroups_2024-Update | |
PSME_00008207-RA | No alias | (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... | 0.09 | Orthogroups_2024-Update | |
PSME_00033660-RA | No alias | (p40280|h2a_maize : 149.0) Histone H2A - Zea mays... | 0.09 | Orthogroups_2024-Update | |
PSME_00034360-RA | No alias | (q94e96|h2a5_orysa : 203.0) Probable histone H2A.5 -... | 0.02 | Orthogroups_2024-Update | |
Potri.005G026500 | No alias | histone H2A 7 | 0.01 | Orthogroups_2024-Update | |
Potri.006G082300 | No alias | histone H2A 12 | 0.02 | Orthogroups_2024-Update | |
Solyc01g099410 | No alias | Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) | 0.01 | Orthogroups_2024-Update | |
Solyc09g074300 | No alias | Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) | 0.01 | Orthogroups_2024-Update | |
Solyc09g082710 | No alias | Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) | 0.01 | Orthogroups_2024-Update | |
Solyc10g006560 | No alias | Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) | 0.01 | Orthogroups_2024-Update | |
Solyc11g073250 | No alias | Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) | 0.01 | Orthogroups_2024-Update | |
Solyc11g073260 | No alias | Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) | 0.01 | Orthogroups_2024-Update | |
Solyc12g005270 | No alias | Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) | 0.01 | Orthogroups_2024-Update | |
Sopen09g029130 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_533.4 | No alias | (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEA | InterProScan predictions |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
No external refs found! |