Description : (p29022|chia_maize : 237.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (at3g54420 : 222.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (reliability: 444.0) & (original description: no original description)
Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00050706-RA | |
Cluster | HCCA clusters: Cluster_101 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
426710 | No alias | Chitinase family protein | 0.04 | Orthogroups_2024-Update | |
A4A49_35699 | No alias | endochitinase ep3 | 0.04 | Orthogroups_2024-Update | |
At2g43570 | No alias | CHI [Source:UniProtKB/TrEMBL;Acc:A0A178W3M3] | 0.03 | Orthogroups_2024-Update | |
Bradi5g14430 | No alias | homolog of carrot EP3-3 chitinase | 0.07 | Orthogroups_2024-Update | |
Brara.C02209.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.E00903.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
GRMZM2G129189 | No alias | homolog of carrot EP3-3 chitinase | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G085280.3 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
LOC_Os02g39330 | No alias | CHIT1 - Chitinase family protein precursor, expressed | 0.04 | Orthogroups_2024-Update | |
MA_102538g0010 | No alias | (p29022|chia_maize : 115.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_10427514g0010 | No alias | (p29022|chia_maize : 267.0) Endochitinase A precursor... | 0.05 | Orthogroups_2024-Update | |
MA_10430424g0010 | No alias | (p29022|chia_maize : 207.0) Endochitinase A precursor... | 0.08 | Orthogroups_2024-Update | |
MA_10435326g0010 | No alias | (at3g54420 : 247.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
MA_114934g0010 | No alias | (at3g54420 : 218.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
MA_159244g0020 | No alias | (p29022|chia_maize : 291.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_191308g0010 | No alias | (at3g54420 : 235.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
MA_19732g0010 | No alias | (at3g54420 : 130.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
MA_295712g0010 | No alias | (at3g54420 : 239.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
MA_36141g0010 | No alias | (at3g54420 : 245.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
MA_44734g0010 | No alias | (p29022|chia_maize : 203.0) Endochitinase A precursor... | 0.03 | Orthogroups_2024-Update | |
MA_5029466g0010 | No alias | (at2g43590 : 86.3) Chitinase family protein; FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
MA_7544918g0010 | No alias | (p29022|chia_maize : 152.0) Endochitinase A precursor... | 0.05 | Orthogroups_2024-Update | |
PSME_00018393-RA | No alias | (at3g54420 : 241.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
PSME_00029187-RA | No alias | (p29022|chia_maize : 308.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00030535-RA | No alias | (at3g54420 : 248.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
PSME_00036436-RA | No alias | (at3g54420 : 249.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
PSME_00051412-RA | No alias | (at3g54420 : 249.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
Potri.013G125000 | No alias | homolog of carrot EP3-3 chitinase | 0.04 | Orthogroups_2024-Update | |
Seita.7G150200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G150500.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.7G150600.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.7G150700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G132300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G132400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G132500.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
Sobic.006G132700.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Sopen04g027980 | No alias | Chitinase class I | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004568 | chitinase activity | IEA | InterProScan predictions |
BP | GO:0006032 | chitin catabolic process | IEA | InterProScan predictions |
MF | GO:0008061 | chitin binding | IEA | InterProScan predictions |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | Predicted GO |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004420 | hydroxymethylglutaryl-CoA reductase (NADPH) activity | IEP | Predicted GO |
MF | GO:0004556 | alpha-amylase activity | IEP | Predicted GO |
MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | Predicted GO |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006952 | defense response | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
BP | GO:0009117 | nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009605 | response to external stimulus | IEP | Predicted GO |
BP | GO:0009607 | response to biotic stimulus | IEP | Predicted GO |
BP | GO:0009617 | response to bacterium | IEP | Predicted GO |
BP | GO:0009620 | response to fungus | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0015936 | coenzyme A metabolic process | IEP | Predicted GO |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016790 | thiolester hydrolase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | Predicted GO |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0042742 | defense response to bacterium | IEP | Predicted GO |
BP | GO:0043207 | response to external biotic stimulus | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
BP | GO:0050832 | defense response to fungus | IEP | Predicted GO |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0051704 | multi-organism process | IEP | Predicted GO |
BP | GO:0051707 | response to other organism | IEP | Predicted GO |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0065007 | biological regulation | IEP | Predicted GO |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
BP | GO:0098542 | defense response to other organism | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
No external refs found! |