1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00050750-RA

PSME_00050750-RA


Description : (at1g52880 : 206.0) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.; NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q52qh4|nac68_orysa : 171.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (reliability: 410.0) & (original description: no original description)


Gene families : OG_42_0000084 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000084_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050750-RA
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
A4A49_40016 No alias nac domain-containing protein 72 0.03 Orthogroups_2024-Update
At1g52880 No alias NARS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W6K4] 0.03 Orthogroups_2024-Update
Bradi1g24390 No alias NAC domain containing protein 25 0.03 Orthogroups_2024-Update
GRMZM2G011598 No alias NAC domain containing protein 47 0.03 Orthogroups_2024-Update
GRMZM2G068973 No alias NAC (No Apical Meristem) domain transcriptional... 0.03 Orthogroups_2024-Update
Glyma.06G248900 No alias NAC (No Apical Meristem) domain transcriptional... 0.02 Orthogroups_2024-Update
Glyma.13G280000 No alias NAC domain containing protein 2 0.02 Orthogroups_2024-Update
Glyma.16G043200 No alias NAC domain containing protein 47 0.03 Orthogroups_2024-Update
Glyma.19G108800 No alias NAC domain containing protein 47 0.02 Orthogroups_2024-Update
HORVU3Hr1G080100.7 No alias NAC-type transcription factor 0.04 Orthogroups_2024-Update
HORVU5Hr1G111590.2 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g60020 No alias NAC domain transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10434250g0010 No alias (at2g02450 : 274.0) NAC domain containing protein 35... 0.03 Orthogroups_2024-Update
PSME_00019789-RA No alias (at3g15510 : 264.0) Note of caution: not to be confused... 0.03 Orthogroups_2024-Update
PSME_00020753-RA No alias (q52qh4|nac68_orysa : 271.0) NAC domain-containing... 0.04 Orthogroups_2024-Update
PSME_00027176-RA No alias (at1g52880 : 226.0) Transcription factor with a NAC... 0.04 Orthogroups_2024-Update
PSME_00030259-RA No alias (q7f2l3|nac48_orysa : 263.0) NAC domain-containing... 0.04 Orthogroups_2024-Update
PSME_00050136-RA No alias (q52qh4|nac68_orysa : 294.0) NAC domain-containing... 0.03 Orthogroups_2024-Update
PSME_00051109-RA No alias (q52qh4|nac68_orysa : 257.0) NAC domain-containing... 0.04 Orthogroups_2024-Update
PSME_00051526-RA No alias (at1g01720 : 234.0) Belongs to a large family of... 0.04 Orthogroups_2024-Update
Potri.001G404100 No alias NAC (No Apical Meristem) domain transcriptional... 0.04 Orthogroups_2024-Update
Potri.003G166500 No alias NAC domain containing protein 83 0.02 Orthogroups_2024-Update
Potri.019G031400 No alias NAC domain containing protein 47 0.04 Orthogroups_2024-Update
Seita.3G237100.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Seita.5G069100.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G358900.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Seita.8G008100.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G040200.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.002G080100.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.008G094700.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Solyc06g060230 No alias NAC domain-containing protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc10g083450 No alias NAC domain protein (AHRD V3.3 *** A0JBY8_9ASPA) 0.03 Orthogroups_2024-Update
Sopen01g005390 No alias No apical meristem (NAM) protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR003441 NAC-dom 34 140
No external refs found!