1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00051036-RA

PSME_00051036-RA


Description : (at1g32860 : 398.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase_putative (TAIR:AT5G42100.1); Has 2148 Blast hits to 2131 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 2133; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (p52409|e13b_wheat : 259.0) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) - Triticum aestivum (Wheat) & (reliability: 796.0) & (original description: no original description)


Gene families : OG_42_0000462 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051036-RA
Cluster HCCA clusters: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
A4A49_04246 No alias glucan endo-1,3-beta-glucosidase 14 0.02 Orthogroups_2024-Update
At2g27500 No alias Glucan endo-1,3-beta-glucosidase 14... 0.07 Orthogroups_2024-Update
At4g18340 No alias Beta-1,3-glucanase-like protein... 0.04 Orthogroups_2024-Update
At5g42100 No alias Glucan endo-1,3-beta-glucosidase 10... 0.03 Orthogroups_2024-Update
Bradi3g07385 No alias Glycosyl hydrolase superfamily protein 0.05 Orthogroups_2024-Update
Brara.G01316.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.K00451.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
GRMZM5G805609 No alias Glycosyl hydrolase superfamily protein 0.01 Orthogroups_2024-Update
HORVU4Hr1G063240.5 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
LOC_Os01g64170 No alias glycosyl hydrolases family 17, putative, expressed 0.02 Orthogroups_2024-Update
MA_10428771g0010 No alias (at1g32860 : 254.0) Glycosyl hydrolase superfamily... 0.03 Orthogroups_2024-Update
MA_118893g0010 No alias (at3g15800 : 313.0) Glycosyl hydrolase superfamily... 0.03 Orthogroups_2024-Update
MA_21822g0010 No alias (at1g32860 : 351.0) Glycosyl hydrolase superfamily... 0.04 Orthogroups_2024-Update
MA_5603g0010 No alias (at1g30080 : 369.0) Glycosyl hydrolase superfamily... 0.05 Orthogroups_2024-Update
MA_98924g0010 No alias (at1g32860 : 312.0) Glycosyl hydrolase superfamily... 0.04 Orthogroups_2024-Update
Seita.3G225200.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000490 Glyco_hydro_17 37 354
No external refs found!