1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00051162-RA

PSME_00051162-RA


Description : (p25776|orya_orysa : 308.0) Oryzain alpha chain precursor (EC 3.4.22.-) - Oryza sativa (Rice) & (at1g47128 : 307.0) cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21); responsive to dehydration 21 (RD21); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: response to water deprivation; LOCATED IN: apoplast, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 8846 Blast hits to 8044 proteins in 757 species: Archae - 51; Bacteria - 244; Metazoa - 4223; Fungi - 6; Plants - 1942; Viruses - 134; Other Eukaryotes - 2246 (source: NCBI BLink). & (reliability: 614.0) & (original description: no original description)


Gene families : OG_42_0000382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000382_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051162-RA
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
78186 No alias xylem cysteine peptidase 2 0.04 Orthogroups_2024-Update
78855 No alias xylem cysteine peptidase 2 0.03 Orthogroups_2024-Update
Bradi2g20460 No alias xylem bark cysteine peptidase 3 0.04 Orthogroups_2024-Update
Glyma.06G014700 No alias xylem cysteine peptidase 2 0.02 Orthogroups_2024-Update
Glyma.14G085800 No alias Granulin repeat cysteine protease family protein 0.03 Orthogroups_2024-Update
PSME_00019190-RA No alias (at3g19390 : 308.0) Granulin repeat cysteine protease... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA InterProScan predictions
MF GO:0008234 cysteine-type peptidase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000098 sulfur amino acid catabolic process IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0030328 prenylcysteine catabolic process IEP Predicted GO
BP GO:0030329 prenylcysteine metabolic process IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013201 Prot_inhib_I29 42 99
IPR000668 Peptidase_C1A_C 130 277
No external refs found!