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  5. PSME_00051248-RA

PSME_00051248-RA


Description : (at3g56970 : 82.0) Encodes a member of the basic helix-loop-helix transcription factor family protein.; BHLH038; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56980.1); Has 474 Blast hits to 474 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 14; Plants - 368; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 164.0) & (original description: no original description)


Gene families : OG_42_0001810 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001810_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051248-RA
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
Bradi2g60970 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.D00317.1 No alias bHLH-Ib-class transcriptional regulator of copper/iron... 0.02 Orthogroups_2024-Update
Potri.006G037200 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 12 61
No external refs found!