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  5. PSME_00051304-RA

PSME_00051304-RA


Description : (at5g09810 : 651.0) Member of Actin gene family.Mutants are defective in germination and root growth.; actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink). & (p17298|act2_orysa : 650.0) Actin-2 - Oryza sativa (Rice) & (reliability: 1176.0) & (original description: no original description)


Gene families : OG_42_0000262 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051304-RA
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
233752 No alias actin 7 0.04 Orthogroups_2024-Update
A4A49_64884 No alias actin 0.03 Orthogroups_2024-Update
At3g46520 No alias Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497] 0.03 Orthogroups_2024-Update
HORVU1Hr1G002840.6 No alias actin filament protein 0.02 Orthogroups_2024-Update
LOC_Os01g73310 No alias actin, putative, expressed 0.02 Orthogroups_2024-Update
Mp6g10990.1 No alias actin filament protein 0.02 Orthogroups_2024-Update
Mpzg00230.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
PSME_00020741-RA No alias (p17299|act3_orysa : 570.0) Actin-3 - Oryza sativa... 0.03 Orthogroups_2024-Update
PSME_00050983-RA No alias (p17299|act3_orysa : 573.0) Actin-3 - Oryza sativa... 0.04 Orthogroups_2024-Update
Seita.5G393000.1 No alias actin filament protein 0.02 Orthogroups_2024-Update
Sobic.001G112600.1 No alias actin filament protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004000 Actin 11 383
No external refs found!