1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00051332-RA

PSME_00051332-RA


Description : (p24631|hsp21_maize : 114.0) 17.5 kDa class II heat shock protein - Zea mays (Maize) & (at5g12020 : 101.0) 17.6 kDa class II heat shock protein (HSP17.6II); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)


Gene families : OG_42_0000044 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000044_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051332-RA
Cluster HCCA clusters: Cluster_717

Target Alias Description ECC score Gene Family Method Actions
Mp5g23150.1 No alias class-C-II small heat-shock-responsive protein 0.03 Orthogroups_2024-Update
PSME_00012475-RA No alias (p19243|hsp11_pea : 160.0) 18.1 kDa class I heat shock... 0.01 Orthogroups_2024-Update
PSME_00021206-RA No alias (p19242|hsp21_pea : 115.0) 17.1 kDa class II heat shock... 0.01 Orthogroups_2024-Update
PSME_00033058-RA No alias (at5g59720 : 157.0) encodes a low molecular weight heat... 0.02 Orthogroups_2024-Update
PSME_00037345-RA No alias (p27880|hsp12_medsa : 206.0) 18.2 kDa class I heat shock... 0.02 Orthogroups_2024-Update
PSME_00045267-RA No alias (at5g59720 : 140.0) encodes a low molecular weight heat... 0.02 Orthogroups_2024-Update
PSME_00055967-RA No alias (p19242|hsp21_pea : 100.0) 17.1 kDa class II heat shock... 0.01 Orthogroups_2024-Update
PSME_00056058-RA No alias (at5g59720 : 151.0) encodes a low molecular weight heat... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002068 A-crystallin/Hsp20_dom 20 116
No external refs found!