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  5. PSME_00051611-RA

PSME_00051611-RA


Description : (at4g28720 : 236.0) Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype.; YUCCA 8 (YUC8); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: brassinosteroid mediated signaling pathway, auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11557 Blast hits to 11539 proteins in 1628 species: Archae - 52; Bacteria - 6582; Metazoa - 787; Fungi - 1560; Plants - 663; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink). & (reliability: 472.0) & (original description: no original description)


Gene families : OG_42_0000171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000171_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051611-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
80431 No alias Flavin-binding monooxygenase family protein 0.01 Orthogroups_2024-Update
At1g48910 No alias Probable indole-3-pyruvate monooxygenase YUCCA10... 0.02 Orthogroups_2024-Update
Bradi2g10302 No alias Flavin-binding monooxygenase family protein 0.02 Orthogroups_2024-Update
Brara.F03781.1 No alias flavin-dependent monooxygenase *(YUCCA) 0.03 Orthogroups_2024-Update
Brara.I05483.1 No alias flavin-dependent monooxygenase *(YUCCA) 0.02 Orthogroups_2024-Update
Brara.J02239.1 No alias flavin-dependent monooxygenase *(YUCCA) 0.02 Orthogroups_2024-Update
GRMZM2G328780 No alias Flavin-binding monooxygenase family protein 0.02 Orthogroups_2024-Update
Glyma.05G231100 No alias Flavin-binding monooxygenase family protein 0.02 Orthogroups_2024-Update
Glyma.06G072100 No alias Flavin-binding monooxygenase family protein 0.02 Orthogroups_2024-Update
PSME_00009545-RA No alias (at5g43890 : 530.0) Encodes a YUCCA-like putative flavin... 0.04 Orthogroups_2024-Update
Seita.5G044200.1 No alias flavin-dependent monooxygenase *(YUCCA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!